myRT

myRT report for GCA_002474785.1_ASM247478v1

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Seq: NOFG01000140.1 Escherichia coli strain MOD1-EC5198 MOD1-EC5198_140_length_2272_cov_419.799, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1 098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 73-1 371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NOFG01000036.1 Escherichia coli strain MOD1-EC5198 MOD1-EC5198_36_length_46726_cov_48.184, whole genome shotgun sequence (46726 bp)
Overview 1 RT 1: 17827-21853 bp Neighborhood of RT #1 [17827, 21853] HTH_XRE RVT-Retrons PRK13889 Feature: gene Location: 17827-18042 bp Feature: gene Location: 18133-18414 bp Feature: domain Description: HTH_XRE Location: 18148-18313 bp Feature: domain Description: HTH_XRE Location: 18148-18313 bp Feature: gene Location: 18407-19507 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18548-19100 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18548-19100 bp Feature: gene Location: 19584-21086 bp Feature: domain Description: PRK13889 Location: 19587-20166 bp Feature: domain Description: PRK13889 Location: 19587-2 0166 bp Feature: gene Location: 21689-21853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional)

Seq: NOFG01000040.1 Escherichia coli strain MOD1-EC5198 MOD1-EC5198_40_length_41848_cov_60.2689, whole genome shotgun sequence (41848 bp)
Overview 1 RT 1: 23724-28015 bp Neighborhood of RT #1 [23724, 28015] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 23724-24986 bp Feature: domain Description: YesM Location: 24237-24978 bp Feature: domain Description: YesM Location: 2423 7-24978 bp Feature: gene Location: 25016-25186 bp Feature: gene Location: 25536-26057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25542-25824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25542-25824 bp Feature: domain Description: GIIM Note: maturase Location: 25872-26052 bp Feature: domain Description: GIIM Note: maturase Location: 25872-26052 bp Feature: gene Location: 26085-26624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26415-26493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26415-26493 bp Feature: gene Location: 26655-26852 bp Feature: gene Location: 27110-28015 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: NOFG01000050.1 Escherichia coli strain MOD1-EC5198 MOD1-EC5198_50_length_30457_cov_66.9861, whole genome shotgun sequence (30457 bp)
Overview 1 RT 1: 8113-11445 bp Neighborhood of RT #1 [8113, 11477] PinE RVT-GII GIIM PRK09413 Feature: gene Location: 8113-8742 bp Feature: domain Description: PinE Location: 8188-8737 bp Feature: domain Description: PinE Location: 8188-8737 bp Feature: gene Location: 8842-9243 bp Feature: gene Location: 9452-10804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9773-10391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9773-10391 bp Feature: domain Description: GIIM Note: maturase Location: 10439-10670 bp Feature: domain Description: GIIM Note: maturase Location: 104 39-10670 bp Feature: gene Location: 10875-11225 bp Feature: gene Location: 11280-11477 bp Feature: domain Description: PRK09413 Location: 11283-11445 bp Feature: domain Description: PRK094 13 Location: 11283-114 4 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII, GIIM (pfam08388), PRK09413 (IS2 repressor TnpA; Reviewed)

Seq: NOFG01000065.1 Escherichia coli strain MOD1-EC5198 MOD1-EC5198_65_length_16662_cov_62.0789, whole genome shotgun sequence (16662 bp)
Overview 1 RT 1: 3755-7806 bp Neighborhood of RT #1 [3755, 7806] LacI PBP1_GntR RVT-GII GIIM RVT-GII Feature: gene Location: 3755-4786 bp Feature: domain Description: LacI Location: 3797-3932 bp Feature: domain Description: LacI Location: 3797-3932 bp Feature: domain Description: PBP1_GntR Location: 3971-4781 bp Feature: domain Description: PBP1_GntR Location: 3971-4781 bp Feature: gene Location: 4917-5135 bp Feature: gene Location: 5313-6164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5316-5724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 316-5 724 bp Feature: domain Description: GIIM Note: maturase Location: 5772-5994 bp Feature: domain Description: GIIM Note: maturase Location: 5 772-5 994 bp Feature: gene Location: 6137-6571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6329-6545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6329-65 45 bp Feature: gene Location: 6740-6937 bp Feature: gene Location: 7480-7806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LacI (pfam00356), PBP1_GntR (cd01575), RVT-GII, GIIM (pfam08388)