myRT

myRT report for GCA_002474915.1_ASM247491v1

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Seq: NOFS01000045.1 Escherichia coli strain MOD1-EC5162 MOD1-EC5162_45_length_23779_cov_86.8597, whole genome shotgun sequence (23779 bp)
Overview 1 RT 1: 833-5567 bp Neighborhood of RT #1 [833, 5581] InsE TerD vWA-TerF-like RVT-GII GIIM TerD Feature: gene Location: 833-1258 bp Feature: domain Description: InsE Location: 848-1238 bp Feature: domain Description: InsE Location: 848-1 238 bp Feature: gene Location: 1416-2657 bp Feature: domain Description: TerD Location: 1419-1899 bp Feature: domain Description: TerD Location: 1 41 9-1 899 bp Feature: domain Description: vWA-TerF-like Location: 2052-2652 bp Feature: domain Description: vWA-TerF-like Location: 2052-2652 bp Feature: gene Location: 3116-4504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3446-4064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3446-4064 bp Feature: domain Description: GIIM Note: maturase Location: 4112-4343 bp Feature: domain Description: GIIM Note: maturase Location: 41 1 2-4343 bp Feature: gene Location: 4535-4732 bp Feature: gene Location: 5006-5581 bp Feature: domain Description: TerD Location: 5009-5567 bp Feature: domain Description: TerD Location: 5009-5567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TerD (pfam02342), vWA-TerF-like (pfam10138), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: NOFS01000007.1 Escherichia coli strain MOD1-EC5162 MOD1-EC5162_7_length_194873_cov_88.3247, whole genome shotgun sequence (194873 bp)
Overview 1 RT 1: 110425-116268 bp Neighborhood of RT #1 [110425, 116270] Pox_D5 RVT-Retrons TIR_2 Prim_Zn_Ribbon COG3378 DUF5375 Feature: gene Location: 110425-110601 bp Feature: gene Location: 110994-111146 bp Feature: domain Description: Pox_D5 Location: 110997-111120 bp Feature: domain Description: Pox_D5 Location: 110997-11112 0 bp Feature: gene Location: 111384-113015 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 111699-112296 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 111699-112 2 96 bp Feature: domain Description: TIR_2 Location: 112620-112977 bp Feature: domain Description: TIR_2 Location: 112 62 0-112 977 bp Feature: gene Location: 113602-115935 bp Feature: domain Description: Prim_Zn_Ribbon Location: 113692-113800 bp Feature: domain Description: Prim_Zn_Ribbon Location: 113692 -113800 bp Feature: domain Description: COG3378 Location: 114409-115924 bp Feature: domain Description: COG3378 Location: 114409-11592 4 bp Feature: gene Location: 115950-116270 bp Feature: domain Description: DUF5375 Location: 115953-116268 bp Feature: domain Description: DUF5375 Location: 115953-1162 68 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pox_D5 (pfam03288), RVT-Retrons, TIR_2 (pfam13676), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), DUF5375 (pfam17345)

Seq: NOFS01000097.1 Escherichia coli strain MOD1-EC5162 MOD1-EC5162_97_length_2423_cov_213.589, whole genome shotgun sequence (2423 bp)
Overview 1 RT 1: 130-2189 bp Neighborhood of RT #1 [130, 2189] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 130-1809 bp Feature: RT Description: RVT_N Location: 181-424 bp Feature: RT Description: RVT_N Location: 181-424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 469-1111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 469-1111 bp Feature: domain Description: GIIM Note: maturase Location: 1165-1396 bp Feature: domain Description: GIIM Note: maturase Location: 1165-13 96 bp Feature: domain Description: HNHc Note: nucleases Location: 1609-1771 bp Feature: domain Description: HNHc Note: nucleases Location: 1609-1771 bp Feature: gene Location: 1812-2189 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)