myRT

myRT report for GCA_002474935.1_ASM247493v1

Download annotations/find similar RTs

Seq: NOFU01000137.1 Escherichia coli strain MOD1-EC5160 MOD1-EC5160_137_length_841_cov_153.873, whole genome shotgun sequence (840 bp)
Overview 1 RT 1: 3-838 bp Neighborhood of RT #1 [3, 838] RVT-GII Feature: gene Location: 3-329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: gene Location: 623-838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NOFU01000020.1 Escherichia coli strain MOD1-EC5160 MOD1-EC5160_20_length_103436_cov_63.7979, whole genome shotgun sequence (103436 bp)
Overview 1 RT 1: 2-2237 bp Neighborhood of RT #1 [2, 2254] CbeA_antitoxin RVT-GII GIIM CbeA_antitoxin Feature: gene Location: 2-364 bp Feature: domain Description: CbeA_antitoxin Location: 71-317 bp Feature: domain Description: CbeA_antitoxin Location: 71-317 bp Feature: gene Location: 401-1642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 608-1265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 608-12 65 bp Feature: domain Description: GIIM Note: maturase Location: 1346-1568 bp Feature: domain Description: GIIM Note: maturase Location: 1346-1568 bp Feature: gene Location: 1669-2019 bp Feature: gene Location: 2060-2254 bp Feature: domain Description: CbeA_antitoxin Location: 2180-2237 bp Feature: domain Description: CbeA_antitoxin Location: 2 180-2 2 37 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CbeA_antitoxin (pfam06154), RVT-GII, GIIM (pfam08388)

Seq: NOFU01000254.1 Escherichia coli strain MOD1-EC5160 MOD1-EC5160_268_length_225_cov_74.7118, whole genome shotgun sequence (225 bp)
Overview 1 RT 1: 2-209 bp Neighborhood of RT #1 [2, 223] RVT-GII Feature: gene Location: 2-223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119-209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119-209 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NOFU01000056.1 Escherichia coli strain MOD1-EC5160 MOD1-EC5160_56_length_7745_cov_73.4845, whole genome shotgun sequence (7745 bp)
Overview 1 RT 1: 6607-7729 bp Neighborhood of RT #1 [6607, 7743] InsE RVT-GII Feature: gene Location: 6607-6987 bp Feature: gene Location: 7119-7328 bp Feature: domain Description: InsE Location: 7131-7305 bp Feature: domain Description: InsE Location: 7131-7305 bp Feature: gene Location: 7510-7743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7639-7729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7639-7729 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII

Seq: NOFU01000071.1 Escherichia coli strain MOD1-EC5160 MOD1-EC5160_71_length_3571_cov_92.463, whole genome shotgun sequence (3571 bp)
Overview 1 RT 1: 1416-3324 bp Neighborhood of RT #1 [1416, 3569] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 1416-1820 bp Feature: domain Description: InsE Location: 1446-1782 bp Feature: domain Description: InsE Location: 1446-1782 bp Feature: gene Location: 1849-2205 bp Feature: domain Description: PHA02517 Location: 1852-2161 bp Feature: domain Description: PHA025 17 Location: 185 2-2161 bp Feature: gene Location: 2322-3569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2325-3051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2325 -305 1 bp Feature: domain Description: GIIM Note: maturase Location: 3126-3324 bp Feature: domain Description: GIIM Note: maturase Location: 3126-3324 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)