myRT

myRT report for GCA_002475105.1_ASM247510v1

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Seq: NOGQ01000032.1 Escherichia coli strain MOD1-EC5138 MOD1-EC5138_32_length_28329_cov_63.3823, whole genome shotgun sequence (28329 bp)
Overview 1 RT 1: 8858-12973 bp Neighborhood of RT #1 [8858, 12973] rve_2 RVT-GII GIIM InsG Transposase_20 Feature: gene Location: 8858-9010 bp Feature: domain Description: rve_2 Location: 8888-8996 bp Feature: domain Description: rve_2 Location: 8888-8996 bp Feature: gene Location: 9283-9588 bp Feature: gene Location: 9631-11019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9961-10579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9961 -1 0579 bp Feature: domain Description: GIIM Note: maturase Location: 10627-10858 bp Feature: domain Description: GIIM Note: maturase Location: 1 0627-1 0858 bp Feature: gene Location: 11406-12797 bp Feature: domain Description: InsG Location: 11409-12330 bp Feature: domain Description: InsG Location: 1 1 409-1 2330 bp Feature: domain Description: Transposase_20 Location: 12453-12699 bp Feature: domain Description: Transposase_20 Location: 1 2453-1 2699 bp Feature: gene Location: 12806-12973 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsG (COG3385), Transposase_20 (pfam02371), rve_2 (pfam13333), RVT-GII, GIIM (pfam08388)

Seq: NOGQ01000038.1 Escherichia coli strain MOD1-EC5138 MOD1-EC5138_38_length_11105_cov_69.0315, whole genome shotgun sequence (11105 bp)
Overview 1 RT 1: 1121-4201 bp Neighborhood of RT #1 [1121, 4201] COG3547 COG3547 RVT-GII Feature: gene Location: 1121-1669 bp Feature: domain Description: COG3547 Location: 1133-1619 bp Feature: domain Description: COG3547 Location: 1133-1619 bp Feature: gene Location: 1728-2123 bp Feature: domain Description: COG3547 Location: 1746-2037 bp Feature: domain Description: COG3547 Location: 1746-2 037 bp Feature: gene Location: 2362-3819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2770-3457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 770-3457 bp Feature: gene Location: 3853-3993 bp Feature: gene Location: 4001-4201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII

Seq: NOGQ01000040.1 Escherichia coli strain MOD1-EC5138 MOD1-EC5138_40_length_10658_cov_73.4872, whole genome shotgun sequence (10658 bp)
Overview 1 RT 1: 1-7748 bp Neighborhood of RT #1 [1, 7771] FHA_bHelix FHA_bHelix RVT-GII RVT-GII PHA02517 COG3436 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C Feature: gene Location: 1-573 bp Feature: domain Description: FHA_bHelix Location: 10-226 bp Feature: domain Description: FHA_bHelix Location: 10-226 bp Feature: domain Description: FHA_bHelix Location: 436-547 bp Feature: domain Description: FHA_bHelix Location: 43 6-547 bp Feature: gene Location: 860-1063 bp Feature: gene Location: 1184-1996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1457-1913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1457-1913 bp Feature: gene Location: 2012-2386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2018-2189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2018-2189 bp Feature: gene Location: 2393-2809 bp Feature: gene Location: 2871-3029 bp Feature: domain Description: PHA02517 Location: 2874-2976 bp Feature: domain Description: PHA02517 Location: 2874-2976 bp Feature: gene Location: 4385-5461 bp Feature: domain Description: COG3436 Location: 4697-5168 bp Feature: domain Description: COG3 43 6 Location: 4697-5168 bp Feature: gene Location: 5437-5826 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5542-5785 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5542-5785 bp Feature: gene Location: 6278-6988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6479-6980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6479-6980 bp Feature: gene Location: 7137-7508 bp Feature: domain Description: GIIM Note: maturase Location: 7209-7431 bp Feature: domain Description: GIIM Note: maturase Location: 7209-743 1 bp Feature: gene Location: 7625-7771 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 7637-7748 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 763 7-7748 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, FHA_bHelix (sd00046), PHA02517 (putative transposase OrfB; Reviewed), COG3436 (Transposase ), DDE_Tnp_IS66 (pfam03050), GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817)

Seq: NOGQ01000009.1 Escherichia coli strain MOD1-EC5138 MOD1-EC5138_9_length_200590_cov_46.5218, whole genome shotgun sequence (200590 bp)
Overview 1 RT 1: 29135-38323 bp Neighborhood of RT #1 [29135, 38323] Inovirus_Gp2 RVT-Retrons AAA_15 AAA_15 Feature: gene Location: 29135-29833 bp Feature: domain Description: Inovirus_Gp2 Location: 29246-29801 bp Feature: domain Description: Inovirus_Gp2 Location: 2924 6-29801 bp Feature: gene Location: 30244-34083 bp Feature: gene Location: 34554-35654 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34698-35259 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34 698-35259 bp Feature: gene Location: 35827-37944 bp Feature: domain Description: AAA_15 Location: 35830-36247 bp Feature: domain Description: AAA_15 Location: 35830-3624 7 bp Feature: domain Description: AAA_15 Location: 36385-36811 bp Feature: domain Description: AAA_15 Location: 36385-36811 bp Feature: gene Location: 38090-38323 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Inovirus_Gp2 (pfam11726), RVT-Retrons, AAA_15 (pfam13175)