myRT

myRT report for GCA_002475215.1_ASM247521v1

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Seq: NOHH01000101.1 Escherichia coli strain MOD1-EC5076 MOD1-EC5076_101_length_2080_cov_156.025, whole genome shotgun sequence (2080 bp)
Overview 1 RT 1: 2-1923 bp Neighborhood of RT #1 [2, 1997] DUF987 CbeA_antitoxin RVT-GII GIIM Feature: gene Location: 2-301 bp Feature: domain Description: DUF987 Location: 83-275 bp Feature: domain Description: DUF987 Location: 83-275 bp Feature: gene Location: 312-719 bp Feature: domain Description: CbeA_antitoxin Location: 426-672 bp Feature: domain Description: CbeA_antitoxin Location: 426-672 bp Feature: gene Location: 756-1997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963-1620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963-1 620 bp Feature: domain Description: GIIM Note: maturase Location: 1701-1923 bp Feature: domain Description: GIIM Note: maturase Location: 1 701 -1 923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF987 (pfam06174), CbeA_antitoxin (pfam06154), RVT-GII, GIIM (pfam08388)

Seq: NOHH01000018.1 Escherichia coli strain MOD1-EC5076 MOD1-EC5076_18_length_77763_cov_104.585, whole genome shotgun sequence (77763 bp)
Overview 1 RT 1: 65235-72192 bp Neighborhood of RT #1 [65235, 72194] AAA_15 RVT-Retrons cbl PRK11233 Feature: gene Location: 65235-65540 bp Feature: gene Location: 66419-68695 bp Feature: domain Description: AAA_15 Location: 66452-67460 bp Feature: domain Description: AAA_15 Location: 66452 -67460 bp Feature: gene Location: 68810-69910 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 68990-69524 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 68990-6952 4 bp Feature: gene Location: 70225-71175 bp Feature: domain Description: cbl Location: 70228-71173 bp Feature: domain Description: cbl Location: 702 2 8-71173 bp Feature: gene Location: 71277-72194 bp Feature: domain Description: PRK11233 Location: 71280-72192 bp Feature: domain Description: PRK112 33 Location: 712 80-72 192 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, cbl (PRK12679), PRK11233 (nitrogen assimilation transcriptional regulator; Provisional)

Seq: NOHH01000019.1 Escherichia coli strain MOD1-EC5076 MOD1-EC5076_19_length_75089_cov_113.618, whole genome shotgun sequence (75089 bp)
Overview 1 RT 1: 49289-53171 bp Neighborhood of RT #1 [49289, 53176] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 49289-49747 bp Feature: domain Description: dut Location: 49295-49742 bp Feature: domain Description: dut Location: 49295-49742 bp Feature: gene Location: 49854-50450 bp Feature: domain Description: slmA Location: 49860-50436 bp Feature: domain Description: slmA Location: 49860-5043 6 bp Feature: gene Location: 50496-51455 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50631-51180 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5063 1-51180 bp Feature: gene Location: 51753-52409 bp Feature: domain Description: pyrE Location: 51771-52404 bp Feature: domain Description: pyrE Location: 51771-52404 bp Feature: gene Location: 52460-53176 bp Feature: domain Description: rph Location: 52463-53171 bp Feature: domain Description: rph Location: 52463 -53 171 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NOHH01000004.1 Escherichia coli strain MOD1-EC5076 MOD1-EC5076_4_length_308912_cov_108.642, whole genome shotgun sequence (308912 bp)
Overview 1 RT 1: 33084-39087 bp Neighborhood of RT #1 [33084, 39104] Phage_int_SAM_5 INT_C_like_1 PRK09692 RVT-UG7 Psu Feature: gene Location: 33084-34418 bp Feature: domain Description: Phage_int_SAM_5 Location: 33453-33690 bp Feature: domain Description: Phage_int_SAM_5 Location: 334 53-33690 bp Feature: domain Description: INT_C_like_1 Location: 33786-34302 bp Feature: domain Description: INT_C_like_1 Location: 33786-34 302 bp Feature: gene Location: 34687-35871 bp Feature: domain Description: PRK09692 Location: 34693-35848 bp Feature: domain Description: PRK09692 Location: 34 693-3584 8 bp Feature: gene Location: 35864-37492 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 36272-36701 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 36272-36701 bp Feature: gene Location: 37489-38229 bp Feature: gene Location: 38532-39104 bp Feature: domain Description: Psu Location: 38550-39087 bp Feature: domain Description: Psu Location: 38550-39087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_5 (pfam13102), INT_C_like_1 (cd01184), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)

Seq: NOHH01000098.1 Escherichia coli strain MOD1-EC5076 MOD1-EC5076_98_length_2271_cov_566.057, whole genome shotgun sequence (2271 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)