myRT

myRT report for GCA_002475255.1_ASM247525v1

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Seq: NOHK01000104.1 Escherichia coli strain MOD1-EC5068 MOD1-EC5068_104_length_1899_cov_153.22, whole genome shotgun sequence (1899 bp)
Overview 1 RT 1: 159-1713 bp Neighborhood of RT #1 [159, 1748] RVT_N RVT-GII YkfC HNHc Feature: gene Location: 159-1748 bp Feature: RT Description: RVT_N Location: 165-369 bp Feature: RT Description: RVT_N Location: 1 65-369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 414-1056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 4-1 056 bp Feature: domain Description: YkfC Location: 1188-1428 bp Feature: domain Description: YkfC Location: 1 1 88-1 428 bp Feature: domain Description: HNHc Note: nucleases Location: 1554-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1 554-1 71 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: NOHK01000059.1 Escherichia coli strain MOD1-EC5068 MOD1-EC5068_59_length_11378_cov_117.389, whole genome shotgun sequence (11378 bp)
Overview 1 RT 1: 3608-7301 bp Neighborhood of RT #1 [3608, 7360] RVT-GII GIIM DEDDh Feature: gene Location: 3608-3829 bp Feature: gene Location: 3949-4221 bp Feature: gene Location: 4232-5563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4517-5204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4517-52 04 bp Feature: domain Description: GIIM Note: maturase Location: 5321-5489 bp Feature: domain Description: GIIM Note: maturase Location: 532 1-5489 bp Feature: gene Location: 5899-6381 bp Feature: gene Location: 6497-7360 bp Feature: domain Description: DEDDh Location: 6827-7301 bp Feature: domain Description: DEDDh Location: 682 7-7301 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DEDDh (cd06127)

Seq: NOHK01000068.1 Escherichia coli strain MOD1-EC5068 MOD1-EC5068_68_length_6985_cov_105.862, whole genome shotgun sequence (6985 bp)
Overview 1 RT 1: 2001-6980 bp Neighborhood of RT #1 [2001, 6982] Spo0J DUF905 RVT-GII GIIM PRK13732 Feature: gene Location: 2001-3971 bp Feature: domain Description: Spo0J Location: 2109-2799 bp Feature: domain Description: Spo0J Location: 2109-2799 bp Feature: gene Location: 4037-4270 bp Feature: domain Description: DUF905 Location: 4067-4265 bp Feature: domain Description: DUF905 Location: 4067-4265 bp Feature: gene Location: 4435-5772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4738-5371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 473 8-53 71 bp Feature: domain Description: GIIM Note: maturase Location: 5443-5665 bp Feature: domain Description: GIIM Note: maturase Location: 5443 -5665 bp Feature: gene Location: 5983-6276 bp Feature: gene Location: 6332-6982 bp Feature: domain Description: PRK13732 Location: 6437-6980 bp Feature: domain Description: PRK13 73 2 Location: 643 7-6980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spo0J (COG1475), DUF905 (pfam06006), RVT-GII, GIIM (pfam08388), PRK13732 (single-stranded DNA-binding protein; Provisional)

Seq: NOHK01000075.1 Escherichia coli strain MOD1-EC5068 MOD1-EC5068_75_length_4366_cov_129.885, whole genome shotgun sequence (4366 bp)
Overview 1 RT 1: 63-2694 bp Neighborhood of RT #1 [63, 2702] RVT-GII IbrB_like YbdN Feature: gene Location: 63-668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66-618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66-618 bp Feature: gene Location: 847-1485 bp Feature: domain Description: IbrB_like Location: 991-1291 bp Feature: domain Description: IbrB_like Location: 991-1291 bp Feature: gene Location: 1470-2702 bp Feature: domain Description: YbdN Location: 1488-2694 bp Feature: domain Description: YbdN Location: 14 88-2694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbdN (COG3969), RVT-GII, IbrB_like (cd16397)

Seq: NOHK01000089.1 Escherichia coli strain MOD1-EC5068 MOD1-EC5068_89_length_2924_cov_315.397, whole genome shotgun sequence (2924 bp)
Overview 1 RT 1: 91-2923 bp Neighborhood of RT #1 [91, 2922] RVT_N RVT-GII GIIM HNHc PRK13699 Feature: gene Location: 91-1791 bp Feature: RT Description: RVT_N Location: 145-388 bp Feature: RT Description: RVT_N Location: 145 -388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1069 bp Feature: domain Description: GIIM Note: maturase Location: 1120-1354 bp Feature: domain Description: GIIM Note: maturase Location: 1120-135 4 bp Feature: domain Description: HNHc Note: nucleases Location: 1585-1735 bp Feature: domain Description: HNHc Note: nucleases Location: 15 85 -1735 bp Feature: gene Location: 1828-1956 bp Feature: gene Location: 2278-2922 bp Feature: domain Description: PRK13699 Location: 2413-2923 bp Feature: domain Description: PRK13699 Location: 2413-2923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13699 (putative methylase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)