myRT

myRT report for GCA_002475345.1_ASM247534v1

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Seq: NOHO01000002.1 Escherichia coli strain MOD1-EC5057 MOD1-EC5057_2_length_194515_cov_25.8379, whole genome shotgun sequence (194515 bp)
Overview 1 RT 1: 117388-121706 bp Neighborhood of RT #1 [117388, 121723] Psu RVT-UG17 SLATT_5 PRK09692 Feature: gene Location: 117388-117960 bp Feature: domain Description: Psu Location: 117406-117943 bp Feature: domain Description: Psu Location: 1 1 7406-1 1 7943 bp Feature: gene Location: 118013-118162 bp Feature: gene Location: 118283-119692 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 118520-119132 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 1 8520-1 1 91 32 bp Feature: gene Location: 119791-120528 bp Feature: domain Description: SLATT_5 Location: 119890-120496 bp Feature: domain Description: SLATT_5 Location: 1 1 9890-1 20496 bp Feature: gene Location: 120545-121723 bp Feature: domain Description: PRK09692 Location: 120554-121706 bp Feature: domain Description: PRK09692 Location: 1 20554-1 21 706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG17, SLATT_5 (pfam18160), PRK09692 (Integrase; provisional)

Seq: NOHO01000061.1 Escherichia coli strain MOD1-EC5057 MOD1-EC5057_61_length_17431_cov_58.0308, whole genome shotgun sequence (17431 bp)
Overview 1 RT 1: 7603-11908 bp Neighborhood of RT #1 [7603, 11908] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 7603-7836 bp Feature: domain Description: DUF905 Location: 7633-7831 bp Feature: domain Description: DUF905 Location: 7633-7831 bp Feature: gene Location: 7899-8351 bp Feature: domain Description: PRK13732 Location: 7905-8349 bp Feature: domain Description: PRK13732 Location: 7905-8349 bp Feature: gene Location: 8546-10447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8813-9644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8813-9644 bp Feature: domain Description: Intron_maturas2 Location: 9758-10016 bp Feature: domain Description: Intron_maturas2 Location: 9758-10016 bp Feature: domain Description: HNHc Note: nucleases Location: 10190-10352 bp Feature: domain Description: HNHc Note: nucleases Location: 10190-10352 bp Feature: gene Location: 11125-11331 bp Feature: gene Location: 11444-11908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)