myRT

myRT report for GCA_002475575.1_ASM247557v1

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Seq: NOIB01000021.1 Escherichia coli strain MOD1-EC5014 MOD1-EC5014_21_length_57160_cov_29.1627, whole genome shotgun sequence (57160 bp)
Overview 1 RT 1: 53428-56394 bp Neighborhood of RT #1 [53428, 56591] SLATT_5 RVT-UG17 DUF4094 Peptidase_S74 Feature: gene Location: 53428-53568 bp Feature: gene Location: 53582-54124 bp Feature: domain Description: SLATT_5 Location: 53588-54104 bp Feature: domain Description: SLATT_5 Location: 53588-541 04 bp Feature: gene Location: 54111-55481 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 54339-54945 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 54339-54945 bp Feature: gene Location: 55589-55876 bp Feature: gene Location: 55887-56591 bp Feature: domain Description: DUF4094 Location: 55929-56019 bp Feature: domain Description: DUF4094 Location: 55929-5601 9 bp Feature: domain Description: Peptidase_S74 Location: 56235-56394 bp Feature: domain Description: Peptidase_S74 Location: 56235-56394 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, DUF4094 (pfam13334), Peptidase_S74 (pfam13884)

Seq: NOIB01000064.1 Escherichia coli strain MOD1-EC5014 MOD1-EC5014_64_length_4869_cov_45.7765, whole genome shotgun sequence (4869 bp)
Overview 1 RT 1: 163-3255 bp Neighborhood of RT #1 [163, 3320] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 163-609 bp Feature: domain Description: PHA02517 Location: 166-607 bp Feature: domain Description: PHA02 517 Location: 166-607 bp Feature: gene Location: 726-2249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 999-1731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 999-1731 bp Feature: domain Description: GIIM Note: maturase Location: 1806-2004 bp Feature: domain Description: GIIM Note: maturase Location: 1806-2 004 bp Feature: gene Location: 2203-2628 bp Feature: gene Location: 2841-3320 bp Feature: domain Description: PHA02517 Location: 2901-3255 bp Feature: domain Description: PHA02 517 Location: 2 901-32 55 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)