myRT

myRT report for GCA_002476785.1_ASM247678v1

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Seq: DLMF01000043.1 TPA_asm: Acidimicrobiales bacterium UBA7543 UBA7543_contig_24491, whole genome shotgun sequence (4019 bp)
Overview 1 RT 1: 659-3955 bp Neighborhood of RT #1 [659, 4017] PinE Zn_ribbon_recom HTH_MerR-trunc HTH_17 RVT-GII Feature: gene Location: 659-1009 bp Feature: gene Location: 1077-3353 bp Feature: domain Description: PinE Location: 1131-1716 bp Feature: domain Description: PinE Location: 1 1 31 -1 71 6 bp Feature: domain Description: Zn_ribbon_recom Location: 2064-2232 bp Feature: domain Description: Zn_ribbon_recom Location: 2064-2232 bp Feature: domain Description: HTH_MerR-trunc Location: 2919-3015 bp Feature: domain Description: HTH_MerR-trunc Location: 291 9-301 5 bp Feature: domain Description: HTH_17 Location: 3129-3225 bp Feature: domain Description: HTH_1 7 Location: 31 29-3225 bp Feature: gene Location: 3370-4017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3373-3955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3373-3955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_MerR-trunc (cd04762), HTH_17 (pfam12728), RVT-GII

Seq: DLMF01000215.1 TPA_asm: Acidimicrobiales bacterium UBA7543 UBA7543_contig_30319, whole genome shotgun sequence (5503 bp)
Overview 1 RT 1: 3577-5493 bp Neighborhood of RT #1 [3577, 5501] Pyridox_ox_2 RVT-GII Feature: gene Location: 3577-3987 bp Feature: domain Description: Pyridox_ox_2 Location: 3607-3970 bp Feature: domain Description: Pyridox_ox_2 Location: 3607-3970 bp Feature: gene Location: 4370-4702 bp Feature: gene Location: 4704-5501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5106-5493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5106-5493 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pyridox_ox_2 (pfam12900), RVT-GII

Seq: DLMF01000089.1 TPA_asm: Acidimicrobiales bacterium UBA7543 UBA7543_contig_37716, whole genome shotgun sequence (4506 bp)
Overview 1 RT 1: 1637-4504 bp Neighborhood of RT #1 [1637, 4503] PRK00109 AroE AroE RVT-GII Feature: gene Location: 1637-2188 bp Feature: domain Description: PRK00109 Location: 1700-2171 bp Feature: domain Description: PRK00109 Location: 1700-2171 bp Feature: gene Location: 2185-3441 bp Feature: domain Description: AroE Location: 2251-2824 bp Feature: domain Description: AroE Location: 2251-2824 bp Feature: domain Description: AroE Location: 3142-3334 bp Feature: domain Description: AroE Location: 3 142-3 3 3 4 bp Feature: gene Location: 4168-4503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4285-4504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4285-4504 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00109 (Holliday junction resolvase RuvX), AroE (COG0169), RVT-GII

Seq: DLMF01000023.1 TPA_asm: Acidimicrobiales bacterium UBA7543 UBA7543_contig_595, whole genome shotgun sequence (8562 bp)
Overview 1 RT 1: 2-4927 bp Neighborhood of RT #1 [2, 4927] AcrR RVT-GII GIIM YlaC Feature: gene Location: 2-130 bp Feature: gene Location: 610-1290 bp Feature: domain Description: AcrR Location: 661-1171 bp Feature: domain Description: AcrR Location: 661-1171 bp Feature: gene Location: 1401-2744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1722-2349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1722-234 9 bp Feature: domain Description: GIIM Note: maturase Location: 2439-2658 bp Feature: domain Description: GIIM Note: maturase Location: 24 39-2658 bp Feature: gene Location: 3357-3851 bp Feature: domain Description: YlaC Location: 3417-3579 bp Feature: domain Description: YlaC Location: 34 17-3579 bp Feature: gene Location: 3869-4927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), AcrR (COG1309)

Seq: DLMF01000253.1 TPA_asm: Acidimicrobiales bacterium UBA7543 UBA7543_contig_6234, whole genome shotgun sequence (3140 bp)
Overview 1 RT 1: 1-2777 bp Neighborhood of RT #1 [1, 2989] PRK09183 RVT-GII GIIM Feature: gene Location: 1-309 bp Feature: gene Location: 306-902 bp Feature: domain Description: PRK09183 Location: 366-876 bp Feature: domain Description: PRK09183 Location: 366-876 bp Feature: gene Location: 1370-2989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1787-2480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1787-2480 bp Feature: domain Description: GIIM Note: maturase Location: 2549-2777 bp Feature: domain Description: GIIM Note: maturase Location: 25 49-2777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK09183 (transposase/IS protein; Provisional)

Seq: DLMF01000283.1 TPA_asm: Acidimicrobiales bacterium UBA7543 UBA7543_contig_6381, whole genome shotgun sequence (24659 bp)
Overview 1 RT 1: 3-4360 bp Neighborhood of RT #1 [3, 4419] RVT-GII COG5421 DUF2182 Feature: gene Location: 3-1571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 489-1179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 489-1179 bp Feature: gene Location: 2134-3504 bp Feature: domain Description: COG5421 Location: 2353-3292 bp Feature: domain Description: COG5421 Location: 2353-3292 bp Feature: gene Location: 3967-4419 bp Feature: domain Description: DUF2182 Location: 4018-4360 bp Feature: domain Description: DUF2182 Location: 4018-436 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5421 (Transposase ), RVT-GII