myRT

myRT report for GCA_002478115.1_ASM247811v1

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Seq: DLMH01000141.1 TPA_asm: Acidobacteria bacterium UBA7541 UBA7541_contig_1006, whole genome shotgun sequence (56971 bp)
Overview 1 RT 1: 38333-46189 bp Neighborhood of RT #1 [38333, 46203] RVT-UG19 cysS PRK05769 Feature: gene Location: 38333-38821 bp Feature: gene Location: 39043-39363 bp Feature: gene Location: 40140-42260 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 40512-40989 bp Feature: RT Description: RVT-UG1 9 Note: UG1 9 RT Location: 4051 2-40989 bp Feature: gene Location: 43202-44641 bp Feature: domain Description: cysS Location: 43211-44636 bp Feature: domain Description: cysS Location: 4321 1 -44636 bp Feature: gene Location: 44854-46203 bp Feature: domain Description: PRK05769 Location: 44875-46189 bp Feature: domain Description: PRK05769 Location: 44875-461 89 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG19, cysS (TIGR00435), PRK05769 (acetyl ornithine aminotransferase family protein)

Seq: DLMH01000067.1 TPA_asm: Acidobacteria bacterium UBA7541 UBA7541_contig_1196, whole genome shotgun sequence (19613 bp)
Overview 1 RT 1: 12290-15505 bp Neighborhood of RT #1 [12290, 15606] RimI RVT-GII COG5659 Feature: gene Location: 12290-12745 bp Feature: domain Description: RimI Location: 12311-12698 bp Feature: domain Description: RimI Location: 12 311-12 698 bp Feature: gene Location: 12775-12918 bp Feature: gene Location: 13602-13940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13617-13791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13617-13791 bp Feature: gene Location: 13968-14156 bp Feature: gene Location: 14317-15606 bp Feature: domain Description: COG5659 Location: 14323-15505 bp Feature: domain Description: COG5659 Location: 1432 3-15505 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RimI (COG0456), RVT-GII, COG5659 (SRSO17 transposase )

Seq: DLMH01000020.1 TPA_asm: Acidobacteria bacterium UBA7541 UBA7541_contig_220, whole genome shotgun sequence (198938 bp)
Overview 1 RT 1: 84993-90097 bp Neighborhood of RT #1 [84993, 90156] RVT-G2L4 TlpA_like_family Feature: gene Location: 84993-85532 bp Feature: gene Location: 86847-86990 bp Feature: gene Location: 87006-88274 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 87228-87825 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 87228-87825 bp Feature: gene Location: 88284-88682 bp Feature: gene Location: 88990-90156 bp Feature: domain Description: TlpA_like_family Location: 89764-90097 bp Feature: domain Description: TlpA_like_family Location: 89764-90097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-G2L4, TlpA_like_family (cd02966)

Seq: DLMH01000002.1 TPA_asm: Acidobacteria bacterium UBA7541 UBA7541_contig_5016, whole genome shotgun sequence (5354 bp)
Overview 1 RT 1: 4235-5350 bp Neighborhood of RT #1 [4235, 5352] STKc_PknB_like RVT_N RVT-GII Feature: gene Location: 4235-4570 bp Feature: domain Description: STKc_PknB_like Location: 4373-4490 bp Feature: domain Description: STKc_PknB_like Location: 4 373-4 4 90 bp Feature: gene Location: 4605-4742 bp Feature: gene Location: 4990-5352 bp Feature: domain Description: RVT_N Location: 4993-5182 bp Feature: domain Description: RVT_N Location: 4 993-5182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5227-5350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5227-5350 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STKc_PknB_like (cd14014), RVT_N (pfam13655), RVT-GII

Seq: DLMH01000050.1 TPA_asm: Acidobacteria bacterium UBA7541 UBA7541_contig_5882, whole genome shotgun sequence (17232 bp)
Overview 1 RT 1: 190-8108 bp Neighborhood of RT #1 [190, 8108] PtrB RVT-GII GIIM Met_dep_hydrolase_A Feature: gene Location: 190-2337 bp Feature: domain Description: PtrB Location: 298-2323 bp Feature: domain Description: PtrB Location: 298-2323 bp Feature: gene Location: 3159-4550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3504-4125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35 04-4125 bp Feature: domain Description: GIIM Note: maturase Location: 4176-4392 bp Feature: domain Description: GIIM Note: maturase Location: 4176-4392 bp Feature: gene Location: 4872-6053 bp Feature: domain Description: Met_dep_hydrolase_A Location: 5079-6042 bp Feature: domain Description: Met_dep_hydrolase_A Location: 5 079-6042 bp Feature: gene Location: 6774-8108 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PtrB (COG1770), RVT-GII, GIIM (pfam08388), Met_dep_hydrolase_A (cd01299)