myRT

myRT report for GCA_002478145.1_ASM247814v1

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Seq: DLMI01000221.1 TPA_asm: Acidobacteria bacterium UBA7540 UBA7540_contig_108, whole genome shotgun sequence (130806 bp)
Overview 1 RT 1: 2648-7254 bp Neighborhood of RT #1 [2648, 7370] RVT-GII GIIM PRK10137 TPR TPR_14 TPR TPR Feature: gene Location: 2648-2779 bp Feature: gene Location: 2822-3175 bp Feature: gene Location: 3472-3918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3475-3604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3475-3604 bp Feature: domain Description: GIIM Note: maturase Location: 3685-3901 bp Feature: domain Description: GIIM Note: maturase Location: 3685-3901 bp Feature: gene Location: 4299-5600 bp Feature: domain Description: PRK10137 Location: 4905-5508 bp Feature: domain Description: PRK1 01 37 Location: 4905-5508 bp Feature: gene Location: 5946-7370 bp Feature: domain Description: TPR Location: 6075-6339 bp Feature: domain Description: TPR Location: 6075-6339 bp Feature: domain Description: TPR_14 Location: 6381-6462 bp Feature: domain Description: TPR_1 4 Location: 6381 -6462 bp Feature: domain Description: TPR Location: 6567-6897 bp Feature: domain Description: TPR Location: 6567-6897 bp Feature: domain Description: TPR Location: 7050-7254 bp Feature: domain Description: TPR Location: 7050-7254 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK10137 (alpha-glucosidase; Provisional), TPR (smart00028), TPR_14 (pfam13428)

Seq: DLMI01000026.1 TPA_asm: Acidobacteria bacterium UBA7540 UBA7540_contig_172, whole genome shotgun sequence (51669 bp)
Overview 1 RT 1: 6643-14936 bp Neighborhood of RT #1 [6643, 15157] URO-D_like LacZ RVT-GII GIIM URO-D Glyco_hydro_127 Feature: gene Location: 6643-7128 bp Feature: domain Description: URO-D_like Location: 6679-7093 bp Feature: domain Description: URO-D_like Location: 6679-7093 bp Feature: gene Location: 7130-10117 bp Feature: domain Description: LacZ Location: 7505-8726 bp Feature: domain Description: LacZ Location: 7505-872 6 bp Feature: gene Location: 10958-12268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11243-11885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112 43-11885 bp Feature: domain Description: GIIM Note: maturase Location: 11957-12176 bp Feature: domain Description: GIIM Note: maturase Location: 11957-12 176 bp Feature: gene Location: 12548-13702 bp Feature: domain Description: URO-D Location: 12845-13613 bp Feature: domain Description: URO-D Location: 12 845-13613 bp Feature: gene Location: 13733-15157 bp Feature: domain Description: Glyco_hydro_127 Location: 13766-14936 bp Feature: domain Description: Glyco_hydro_12 7 Location: 13766-14936 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT URO-D_like (cd03465), LacZ (COG3250), RVT-GII, GIIM (pfam08388), URO-D (pfam01208), Glyco_hydro_127 (pfam07944)

Seq: DLMI01000226.1 TPA_asm: Acidobacteria bacterium UBA7540 UBA7540_contig_2075, whole genome shotgun sequence (17543 bp)
Overview 1 RT 1: 2070-6366 bp Neighborhood of RT #1 [2070, 6366] Ni_hydr_CYTB RVT-GII Feature: gene Location: 2070-2831 bp Feature: domain Description: Ni_hydr_CYTB Location: 2136-2802 bp Feature: domain Description: Ni_hydr_CYTB Location: 213 6-2802 bp Feature: gene Location: 3058-3594 bp Feature: gene Location: 3675-4835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3843-4455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 843 -4455 bp Feature: gene Location: 5415-5825 bp Feature: gene Location: 5884-6366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ni_hydr_CYTB (pfam01292), RVT-GII

Seq: DLMI01000080.1 TPA_asm: Acidobacteria bacterium UBA7540 UBA7540_contig_26, whole genome shotgun sequence (14452 bp)
Overview 1 RT 1: 5559-8401 bp Neighborhood of RT #1 [5559, 8484] RVT-GII GIIM Resolvase Recombinase Feature: gene Location: 5559-5873 bp Feature: gene Location: 5643-6293 bp Feature: gene Location: 6379-7029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6382-6607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6382-6607 bp Feature: domain Description: GIIM Note: maturase Location: 6661-6886 bp Feature: domain Description: GIIM Note: maturase Location: 6661-6886 bp Feature: gene Location: 7162-7653 bp Feature: gene Location: 7654-8484 bp Feature: domain Description: Resolvase Location: 7669-8107 bp Feature: domain Description: Resolvase Location: 7669-8107 bp Feature: domain Description: Recombinase Location: 8197-8401 bp Feature: domain Description: Recombinase Location: 8197-84 01 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Resolvase (smart00857), Recombinase (pfam07508)

Seq: DLMI01000179.1 TPA_asm: Acidobacteria bacterium UBA7540 UBA7540_contig_272, whole genome shotgun sequence (39129 bp)
Overview 1 RT 1: 36137-38815 bp Neighborhood of RT #1 [36137, 38907] RVT-Retrons RAYT Feature: gene Location: 36137-37033 bp Feature: gene Location: 37036-37212 bp Feature: gene Location: 37251-38207 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37398-37938 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37398-37938 bp Feature: gene Location: 38398-38907 bp Feature: domain Description: RAYT Location: 38440-38815 bp Feature: domain Description: RAYT Location: 38440-38815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, RAYT (COG1943)

Seq: DLMI01000063.1 TPA_asm: Acidobacteria bacterium UBA7540 UBA7540_contig_326, whole genome shotgun sequence (8524 bp)
Overview 1 RT 1: 394-3356 bp Neighborhood of RT #1 [394, 3421] RVT-GII GIIM integrase_gron integrase_gron Feature: gene Location: 394-531 bp Feature: gene Location: 713-1801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 758-1376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 758-1376 bp Feature: domain Description: GIIM Note: maturase Location: 1427-1643 bp Feature: domain Description: GIIM Note: maturase Location: 1427-16 43 bp Feature: gene Location: 1939-2241 bp Feature: gene Location: 2666-3421 bp Feature: domain Description: integrase_gron Location: 2690-3203 bp Feature: domain Description: integrase_gron Location: 26 90-3203 bp Feature: domain Description: integrase_gron Location: 3269-3356 bp Feature: domain Description: integrase_gron Location: 326 9-3356 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), integrase_gron (TIGR02249)

Seq: DLMI01000064.1 TPA_asm: Acidobacteria bacterium UBA7540 UBA7540_contig_4742, whole genome shotgun sequence (8804 bp)
Overview 1 RT 1: 4851-8802 bp Neighborhood of RT #1 [4851, 8802] TonB_C TonB_C RVT-GII GIIM Feature: gene Location: 4851-5762 bp Feature: domain Description: TonB_C Location: 5124-5289 bp Feature: domain Description: TonB_C Location: 5124-5289 bp Feature: domain Description: TonB_C Location: 5511-5736 bp Feature: domain Description: TonB_C Location: 5511-57 36 bp Feature: gene Location: 6043-6363 bp Feature: gene Location: 6381-8045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7023-7647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 023-7 647 bp Feature: domain Description: GIIM Note: maturase Location: 7746-7965 bp Feature: domain Description: GIIM Note: maturase Location: 7 7 46-7 965 bp Feature: gene Location: 8602-8802 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TonB_C (pfam03544), RVT-GII, GIIM (pfam08388)

Seq: DLMI01000136.1 TPA_asm: Acidobacteria bacterium UBA7540 UBA7540_contig_8007, whole genome shotgun sequence (4073 bp)
Overview 1 RT 1: 1635-3798 bp Neighborhood of RT #1 [1635, 3869] RVT-GII GIIM Feature: gene Location: 1635-1781 bp Feature: gene Location: 2068-2322 bp Feature: gene Location: 2580-3869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2865-3507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28 65-3507 bp Feature: domain Description: GIIM Note: maturase Location: 3579-3798 bp Feature: domain Description: GIIM Note: maturase Location: 3579-3798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: DLMI01000182.1 TPA_asm: Acidobacteria bacterium UBA7540 UBA7540_contig_819, whole genome shotgun sequence (12295 bp)
Overview 1 RT 1: 161-4710 bp Neighborhood of RT #1 [161, 4710] RVT-GII GIIM Feature: gene Location: 161-1537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-1115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49 7-1115 bp Feature: domain Description: GIIM Note: maturase Location: 1163-1391 bp Feature: domain Description: GIIM Note: maturase Location: 1163-139 1 bp Feature: gene Location: 1621-2004 bp Feature: gene Location: 2014-4710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)