myRT

myRT report for GCA_002479285.1_ASM247928v1

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Seq: DLMK01000005.1 TPA_asm: Pseudomonas stutzeri isolate UBA7538 UBA7538_contig_41, whole genome shotgun sequence (131003 bp)
Overview 1 RT 1: 22963-28674 bp Neighborhood of RT #1 [22963, 28682] DUF4870 rph RVT_N RVT-GII YkfC HNHc YicC gmk Feature: gene Location: 22963-23331 bp Feature: domain Description: DUF4870 Location: 23008-23326 bp Feature: domain Description: DUF4870 Location: 23008-23326 bp Feature: gene Location: 23348-24070 bp Feature: domain Description: rph Location: 23357-24065 bp Feature: domain Description: rph Location: 23357-24065 bp Feature: gene Location: 24224-25954 bp Feature: RT Description: RVT_N Location: 24284-24527 bp Feature: RT Description: RVT_N Location: 24284-24527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24575-25226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24575-25226 bp Feature: domain Description: YkfC Location: 25430-25598 bp Feature: domain Description: YkfC Location: 25430-25598 bp Feature: domain Description: HNHc Note: nucleases Location: 25760-25916 bp Feature: domain Description: HNHc Note: nucleases Location: 25760-2591 6 bp Feature: gene Location: 27137-28000 bp Feature: domain Description: YicC Location: 27140-27998 bp Feature: domain Description: YicC Location: 271 40-27998 bp Feature: gene Location: 28014-28682 bp Feature: domain Description: gmk Location: 28074-28674 bp Feature: domain Description: gmk Location: 28074-28674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4870 (pfam09685), rph (PRK00173), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), YicC (COG1561), gmk (PRK14738)