myRT

myRT report for GCA_002479365.1_ASM247936v1

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Seq: DLMS01000010.1 TPA_asm: Pseudomonas sp. UBA7530 UBA7530_contig_100, whole genome shotgun sequence (164129 bp)
Overview 1 RT 1: 47148-53182 bp Neighborhood of RT #1 [47148, 53193] dut PRK05579 RVT-GII GIIM HNHc RVT_N RVT-GII PRK00024 RpmB Feature: gene Location: 47148-47603 bp Feature: domain Description: dut Location: 47154-47598 bp Feature: domain Description: dut Location: 471 54-47598 bp Feature: gene Location: 47606-48814 bp Feature: domain Description: PRK05579 Location: 47612-48806 bp Feature: domain Description: PRK05579 Location: 4761 2-48806 bp Feature: gene Location: 49022-49984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49055-49253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49055-49253 bp Feature: domain Description: GIIM Note: maturase Location: 49328-49559 bp Feature: domain Description: GIIM Note: maturase Location: 49328-49559 bp Feature: domain Description: HNHc Note: nucleases Location: 49787-49943 bp Feature: domain Description: HNHc Note: nucleases Location: 49787-49943 bp Feature: gene Location: 49905-50756 bp Feature: RT Description: RVT_N Location: 49965-50208 bp Feature: RT Description: RVT_N Location: 49965-50208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50256-50640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50256-50640 bp Feature: gene Location: 51894-52568 bp Feature: domain Description: PRK00024 Location: 51897-52566 bp Feature: domain Description: PRK00024 Location: 51 897-52566 bp Feature: gene Location: 52957-53193 bp Feature: domain Description: RpmB Location: 52960-53182 bp Feature: domain Description: RpmB Location: 52960-531 82 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), PRK05579 (bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated), RVT-GII, GIIM (pfam08388), HNHc (smart00507), RVT_N (pfam13655), PRK00024 (DNA repair protein RadC), RpmB (COG0227)

Seq: DLMS01000011.1 TPA_asm: Pseudomonas sp. UBA7530 UBA7530_contig_2, whole genome shotgun sequence (1389515 bp)
Overview 1 RT 1: 456546-464905 bp Neighborhood of RT #1 [456546, 465036] COG4584 COG4584 DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_IS66_C RVT-GII RVT-GII PHP_HisPPase_Hisj_like Feature: gene Location: 456546-458075 bp Feature: domain Description: COG4584 Location: 456681-457443 bp Feature: domain Description: COG4584 Location: 456681-457443 bp Feature: domain Description: COG4584 Location: 457479-457965 bp Feature: domain Description: COG4584 Location: 457479-457965 bp Feature: gene Location: 458106-458927 bp Feature: domain Description: DDE_Tnp_IS66 Location: 458262-458907 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4582 62 -458907 bp Feature: gene Location: 459483-461156 bp Feature: RT Description: RVT_N Location: 459528-459771 bp Feature: RT Description: RVT_N Location: 45952 8-459771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 459816-460452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 459816-460452 bp Feature: domain Description: GIIM Note: maturase Location: 460506-460737 bp Feature: domain Description: GIIM Note: maturase Location: 460506-460737 bp Feature: gene Location: 461291-461470 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 461342-461453 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 461342 -461453 bp Feature: gene Location: 461557-462423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462271-462379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462 2 71-462 379 bp Feature: gene Location: 462437-463333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462461-462962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462 461-462 962 bp Feature: gene Location: 463382-464173 bp Feature: gene Location: 464170-465036 bp Feature: domain Description: PHP_HisPPase_Hisj_like Location: 464176-464905 bp Feature: domain Description: PHP_HisPPase_Hisj_like Location: 464176-464905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), PHP_HisPPase_Hisj_like (cd12110)

Seq: DLMS01000003.1 TPA_asm: Pseudomonas sp. UBA7530 UBA7530_contig_24, whole genome shotgun sequence (468148 bp)
Overview 1 RT 1: 308165-311287 bp Neighborhood of RT #1 [308165, 311337] Avd_like RVT-DGRs HTH_28 HTH_28 Feature: gene Location: 308165-308764 bp Feature: gene Location: 308834-309241 bp Feature: domain Description: Avd_like Location: 308909-309215 bp Feature: domain Description: Avd_like Location: 3 08909-3 09215 bp Feature: gene Location: 309364-310611 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 309694-310378 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 09694-3 103 78 bp Feature: gene Location: 310608-310862 bp Feature: gene Location: 310873-311337 bp Feature: domain Description: HTH_28 Location: 311074-311149 bp Feature: domain Description: HTH_28 Location: 3 11074-3 11149 bp Feature: domain Description: HTH_28 Location: 311203-311287 bp Feature: domain Description: HTH_28 Location: 3 11203 -3 11287 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, HTH_28 (pfam13518)

Seq: DLMS01000001.1 TPA_asm: Pseudomonas sp. UBA7530 UBA7530_contig_57, whole genome shotgun sequence (1147288 bp)
Overview 1 RT 1: 486510-491776 bp Neighborhood of RT #1 [486510, 491796] RVT_N RVT-GII GIIM HNHc DUF3509 Feature: gene Location: 486510-486665 bp Feature: gene Location: 487279-487968 bp Feature: gene Location: 488010-489743 bp Feature: RT Description: RVT_N Location: 488070-488313 bp Feature: RT Description: RVT_N Location: 4 88070-4 88313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 488361-489012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 88361-4 89012 bp Feature: domain Description: GIIM Note: maturase Location: 489090-489318 bp Feature: domain Description: GIIM Note: maturase Location: 4 89090-4 89318 bp Feature: domain Description: HNHc Note: nucleases Location: 489546-489702 bp Feature: domain Description: HNHc Note: nucleases Location: 4 8954 6-4 89702 bp Feature: gene Location: 491231-491452 bp Feature: gene Location: 491479-491796 bp Feature: domain Description: DUF3509 Location: 491524-491776 bp Feature: domain Description: DUF3509 Location: 4 91524 -4 91776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF3509 (pfam12021)