myRT

myRT report for GCA_002483475.1_ASM248347v1

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Seq: DLHZ01000122.1 TPA_asm: Nitrospira sp. UBA7655 UBA7655_contig_1557, whole genome shotgun sequence (6465 bp)
Overview 1 RT 1: 111-2389 bp Neighborhood of RT #1 [111, 2389] RVT-GII GIIM Feature: gene Location: 111-1538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 507-1125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 507-1 1 25 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1389 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 73-1 389 bp Feature: gene Location: 1653-1820 bp Feature: gene Location: 1913-2389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: DLHZ01000064.1 TPA_asm: Nitrospira sp. UBA7655 UBA7655_contig_297, whole genome shotgun sequence (9129 bp)
Overview 1 RT 1: 1-3934 bp Neighborhood of RT #1 [1, 3942] RadC RVT_N RVT-GII GIIM IS285 PRK00024 Feature: gene Location: 1-237 bp Feature: domain Description: RadC Location: 10-199 bp Feature: domain Description: RadC Location: 10-199 bp Feature: gene Location: 312-1826 bp Feature: RT Description: RVT_N Location: 363-606 bp Feature: RT Description: RVT_N Location: 363-606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 651-1302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 651-1302 bp Feature: domain Description: GIIM Note: maturase Location: 1359-1590 bp Feature: domain Description: GIIM Note: maturase Location: 1359-1590 bp Feature: gene Location: 2226-3455 bp Feature: domain Description: IS285 Location: 2286-3441 bp Feature: domain Description: IS2 85 Location: 2 2 86-3441 bp Feature: gene Location: 3592-3942 bp Feature: domain Description: PRK00024 Location: 3751-3934 bp Feature: domain Description: PRK0002 4 Location: 3751-3934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RadC (pfam04002), IS285 (COG3328), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK00024 (DNA repair protein RadC)

Seq: DLHZ01000017.1 TPA_asm: Nitrospira sp. UBA7655 UBA7655_contig_5, whole genome shotgun sequence (35264 bp)
Overview 1 RT 1: 1307-5364 bp Neighborhood of RT #1 [1307, 5384] OMP_b-brl RVT-Retrons DUF4096 DDE_Tnp_1 DDE_Tnp_1 Feature: gene Location: 1307-1864 bp Feature: domain Description: OMP_b-brl Location: 1394-1862 bp Feature: domain Description: OMP_b-brl Location: 13 94-1862 bp Feature: gene Location: 1976-2173 bp Feature: gene Location: 2525-4282 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2660-3299 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2660-3 299 bp Feature: gene Location: 4627-5034 bp Feature: domain Description: DUF4096 Location: 4636-4846 bp Feature: domain Description: DUF4096 Location: 463 6-4846 bp Feature: gene Location: 4752-5384 bp Feature: domain Description: DDE_Tnp_1 Location: 4974-5220 bp Feature: domain Description: DDE_Tnp_1 Location: 4974-5220 bp Feature: domain Description: DDE_Tnp_1 Location: 5241-5364 bp Feature: domain Description: DDE_Tnp_1 Location: 5241-53 64 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OMP_b-brl (pfam13505), RVT-Retrons, DUF4096 (pfam13340), DDE_Tnp_1 (pfam01609)