myRT

myRT report for GCA_002484025.1_ASM248402v1

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Seq: DLJA01000070.1 TPA_asm: Streptococcus suis isolate UBA7628 UBA7628_contig_1077, whole genome shotgun sequence (18073 bp)
Overview 1 RT 1: 15128-17825 bp Neighborhood of RT #1 [15128, 17825] HTH_XRE HTH_XRE RVT-Retrons RVT-Retrons Feature: gene Location: 15128-15469 bp Feature: domain Description: HTH_XRE Location: 15146-15311 bp Feature: domain Description: HTH_XRE Location: 1 51 46-1 531 1 bp Feature: gene Location: 15466-15645 bp Feature: domain Description: HTH_XRE Location: 15472-15637 bp Feature: domain Description: HTH_XRE Location: 1 5472-1 5637 bp Feature: gene Location: 15843-16130 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15966-16065 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 5966-1 6065 bp Feature: gene Location: 16181-16570 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16187-16553 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 61 87-1 6553 bp Feature: gene Location: 16614-16970 bp Feature: gene Location: 17472-17825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons

Seq: DLJA01000043.1 TPA_asm: Streptococcus suis isolate UBA7628 UBA7628_contig_2024, whole genome shotgun sequence (16813 bp)
Overview 1 RT 1: 64-4128 bp Neighborhood of RT #1 [64, 4316] RVT-GII GIIM FtsX OmpR Feature: gene Location: 64-1341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 268-883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 68-883 bp Feature: domain Description: GIIM Note: maturase Location: 937-1150 bp Feature: domain Description: GIIM Note: maturase Location: 937-1150 bp Feature: gene Location: 1952-3952 bp Feature: domain Description: FtsX Location: 2213-2480 bp Feature: domain Description: FtsX Location: 2 2 13-2 480 bp Feature: gene Location: 3954-4316 bp Feature: domain Description: OmpR Location: 3957-4128 bp Feature: domain Description: OmpR Location: 3957-412 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), FtsX (pfam02687), OmpR (COG0745)