myRT

myRT report for GCA_002484405.1_ASM248440v1

Download annotations/find similar RTs

Seq: NNSY01000003.1 Escherichia coli strain MOD1-EC6680 MOD1-EC6680_3_length_310655_cov_38.7602, whole genome shotgun sequence (310655 bp)
Overview 1 RT 1: 272305-276915 bp Neighborhood of RT #1 [272305, 276915] HTH_1 PBP2_CrgA_like_5 PBP2_CrgA_like_5 RVT-Retrons Feature: gene Location: 272305-273189 bp Feature: domain Description: HTH_1 Location: 272329-272503 bp Feature: domain Description: HTH_1 Location: 272329-272503 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 272584-273181 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 272584-2731 81 bp Feature: gene Location: 273773-273988 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 273776-273962 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 273776-273962 bp Feature: gene Location: 274852-275784 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 274954-275545 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 274954-275545 bp Feature: gene Location: 275771-276739 bp Feature: gene Location: 276772-276915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_1 (pfam00126), PBP2_CrgA_like_5 (cd08474), RVT-Retrons

Seq: NNSY01000098.1 Escherichia coli strain MOD1-EC6680 MOD1-EC6680_98_length_2272_cov_124.301, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)