myRT

myRT report for GCA_002484615.1_ASM248461v1

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Seq: NNTK01000016.1 Escherichia coli strain MOD1-EC6667 MOD1-EC6667_16_length_101010_cov_52.5738, whole genome shotgun sequence (101010 bp)
Overview 1 RT 1: 94286-100731 bp Neighborhood of RT #1 [94286, 100922] INT_Rci_Hp1_C INT_Rci_Hp1_C RVT-Retrons AAA_21 HTH_36 Feature: gene Location: 94286-95743 bp Feature: domain Description: INT_Rci_Hp1_C Location: 94664-94862 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 94664-94862 bp Feature: domain Description: INT_Rci_Hp1_C Location: 95147-95618 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 951 47-9561 8 bp Feature: gene Location: 95755-96333 bp Feature: gene Location: 96542-97645 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 96692-97244 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 96692-97244 bp Feature: gene Location: 97812-99929 bp Feature: domain Description: AAA_21 Location: 97887-98796 bp Feature: domain Description: AAA_21 Location: 97887-98796 bp Feature: gene Location: 100389-100922 bp Feature: domain Description: HTH_36 Location: 100575-100731 bp Feature: domain Description: HTH_36 Location: 1 00575-1 00731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_36 (pfam13730), INT_Rci_Hp1_C (cd00796), RVT-Retrons, AAA_21 (pfam13304)

Seq: NNTK01000084.1 Escherichia coli strain MOD1-EC6667 MOD1-EC6667_84_length_3000_cov_143.185, whole genome shotgun sequence (3000 bp)
Overview 1 RT 1: 92-2946 bp Neighborhood of RT #1 [92, 2957] RVT-GII GIIM RVT-GII PHA02517 InsE Feature: gene Location: 92-1039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101-521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101-52 1 bp Feature: domain Description: GIIM Note: maturase Location: 596-794 bp Feature: domain Description: GIIM Note: maturase Location: 596-794 bp Feature: gene Location: 1075-1614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1348-1606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1348-1606 bp Feature: gene Location: 2206-2631 bp Feature: domain Description: PHA02517 Location: 2227-2566 bp Feature: domain Description: PHA02 517 Location: 2 2 2 7-2 566 bp Feature: gene Location: 2673-2957 bp Feature: domain Description: InsE Location: 2685-2946 bp Feature: domain Description: InsE Location: 2 685-2 946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), InsE (COG2963)