myRT

myRT report for GCA_002484875.1_ASM248487v1

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Seq: NNTX01000129.1 Escherichia coli strain MOD1-EC6653 MOD1-EC6653_129_length_2272_cov_224.507, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1 662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1 737-1 935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NNTX01000014.1 Escherichia coli strain MOD1-EC6653 MOD1-EC6653_14_length_91720_cov_61.3282, whole genome shotgun sequence (91720 bp)
Overview 1 RT 1: 20416-26352 bp Neighborhood of RT #1 [20416, 26618] RVT-UG5 nitrilase PRK09692 HTH_XRE Feature: gene Location: 20416-20559 bp Feature: gene Location: 20565-21254 bp Feature: gene Location: 21251-24127 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 21725-22253 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 172 5-2 2 2 53 bp Feature: domain Description: nitrilase Location: 23465-24047 bp Feature: domain Description: nitrilase Location: 2 3465-2 4047 bp Feature: gene Location: 24220-25476 bp Feature: domain Description: PRK09692 Location: 24229-25432 bp Feature: domain Description: PRK09692 Location: 2 42 2 9-2 5432 bp Feature: gene Location: 26154-26618 bp Feature: domain Description: HTH_XRE Location: 26184-26352 bp Feature: domain Description: HTH_XRE Location: 2 6184-2 6352 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), PRK09692 (Integrase; provisional), HTH_XRE (smart00530)

Seq: NNTX01000005.1 Escherichia coli strain MOD1-EC6653 MOD1-EC6653_5_length_149921_cov_52.5234, whole genome shotgun sequence (149921 bp)
Overview 1 RT 1: 39998-45340 bp Neighborhood of RT #1 [39998, 45345] PRK14987 gntK RVT_N RVT-GII GIIM HNHc PRK10472 Feature: gene Location: 39998-40993 bp Feature: domain Description: PRK14987 Location: 40001-40991 bp Feature: domain Description: PRK14987 Location: 40001-40991 bp Feature: gene Location: 41132-41659 bp Feature: domain Description: gntK Location: 41174-41654 bp Feature: domain Description: gntK Location: 41174-41654 bp Feature: gene Location: 41920-43587 bp Feature: domain Description: RVT_N Location: 41968-42205 bp Feature: domain Description: RVT_N Location: 41968-42205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42256-42898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42256-42898 bp Feature: domain Description: GIIM Note: maturase Location: 42949-43183 bp Feature: domain Description: GIIM Note: maturase Location: 42949-43 183 bp Feature: domain Description: HNHc Note: nucleases Location: 43393-43552 bp Feature: domain Description: HNHc Note: nucleases Location: 43 3 93 -43 552 bp Feature: gene Location: 43706-44002 bp Feature: gene Location: 44224-45345 bp Feature: domain Description: PRK10472 Location: 44227-45340 bp Feature: domain Description: PRK10472 Location: 44227-453 40 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14987 (HTH-type transcriptional regulator GntR), gntK (PRK11545), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK10472 (low affinity gluconate transporter; Provisional)