myRT

myRT report for GCA_002484955.1_ASM248495v1

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Seq: NNUA01000122.1 Escherichia coli strain MOD1-EC6650 MOD1-EC6650_122_length_2657_cov_29.2853, whole genome shotgun sequence (2657 bp)
Overview 1 RT 1: 1-2407 bp Neighborhood of RT #1 [1, 2538] PRK15434 RVT-GII IS285 DDE_Tnp_1_assoc Feature: gene Location: 1-219 bp Feature: domain Description: PRK15434 Location: 4-199 bp Feature: domain Description: PRK1 5434 Location: 4-1 99 bp Feature: gene Location: 639-860 bp Feature: gene Location: 921-1214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1092-1200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 092-1 200 bp Feature: gene Location: 1263-2021 bp Feature: domain Description: IS285 Location: 1293-1983 bp Feature: domain Description: IS285 Location: 1 293-1 983 bp Feature: gene Location: 2125-2538 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 2146-2407 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 21 46-2407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15434 (GDP-mannose mannosyl hydrolase), IS285 (COG3328), DDE_Tnp_1_assoc (pfam13808), RVT-GII

Seq: NNUA01000023.1 Escherichia coli strain MOD1-EC6650 MOD1-EC6650_23_length_74986_cov_28.3957, whole genome shotgun sequence (74986 bp)
Overview 1 RT 1: 24086-27968 bp Neighborhood of RT #1 [24086, 27973] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 24086-24802 bp Feature: domain Description: rph Location: 24089-24797 bp Feature: domain Description: rph Location: 2 4089-2 4797 bp Feature: gene Location: 24853-25509 bp Feature: domain Description: pyrE Location: 24871-25504 bp Feature: domain Description: pyrE Location: 2 4871-2 5504 bp Feature: gene Location: 25807-26766 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 25942-26491 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 5942 -2 6491 bp Feature: gene Location: 26812-27408 bp Feature: domain Description: slmA Location: 26818-27394 bp Feature: domain Description: slmA Location: 2 6818-2 7394 bp Feature: gene Location: 27515-27973 bp Feature: domain Description: dut Location: 27521-27968 bp Feature: domain Description: dut Location: 2 752 1-2 7968 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: NNUA01000043.1 Escherichia coli strain MOD1-EC6650 MOD1-EC6650_43_length_43812_cov_27.1245, whole genome shotgun sequence (43812 bp)
Overview 1 RT 1: 41694-43772 bp Neighborhood of RT #1 [41694, 43810] Pox_D5 RVT-Retrons TIR_2 Feature: gene Location: 41694-41876 bp Feature: gene Location: 42263-42415 bp Feature: domain Description: Pox_D5 Location: 42266-42389 bp Feature: domain Description: Pox_D5 Location: 42266-423 89 bp Feature: gene Location: 42653-43810 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42656-43091 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42656-43 091 bp Feature: domain Description: TIR_2 Location: 43415-43772 bp Feature: domain Description: TIR_2 Location: 43 415-43 772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pox_D5 (pfam03288), RVT-Retrons, TIR_2 (pfam13676)