myRT

myRT report for GCA_002484965.1_ASM248496v1

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Seq: NNUB01000017.1 Escherichia coli strain MOD1-EC6649 MOD1-EC6649_17_length_121230_cov_34.0386, whole genome shotgun sequence (121230 bp)
Overview 1 RT 1: 116481-121091 bp Neighborhood of RT #1 [116481, 121091] HTH_1 PBP2_CrgA_like_5 PBP2_CrgA_like_5 RVT-Retrons Feature: gene Location: 116481-117365 bp Feature: domain Description: HTH_1 Location: 116505-116679 bp Feature: domain Description: HTH_1 Location: 1 1 6505-1 1 6679 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 116760-117357 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 1 1 6760-1 1 7357 bp Feature: gene Location: 117949-118164 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 117952-118138 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 1 1 7952-1 1 81 38 bp Feature: gene Location: 119028-119960 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 119130-119721 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 91 30-1 1 9721 bp Feature: gene Location: 119947-120915 bp Feature: gene Location: 120948-121091 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_1 (pfam00126), PBP2_CrgA_like_5 (cd08474), RVT-Retrons

Seq: NNUB01000042.1 Escherichia coli strain MOD1-EC6649 MOD1-EC6649_42_length_30906_cov_40.6535, whole genome shotgun sequence (30906 bp)
Overview 1 RT 1: 18684-22323 bp Neighborhood of RT #1 [18684, 22490] InsE PHA02517 RVT-GII GIIM PHA02517 COG2085 Feature: gene Location: 18684-18986 bp Feature: domain Description: InsE Location: 18723-18972 bp Feature: domain Description: InsE Location: 1872 3-18972 bp Feature: gene Location: 19042-19467 bp Feature: domain Description: PHA02517 Location: 19066-19402 bp Feature: domain Description: PHA02 517 Location: 19066-19402 bp Feature: gene Location: 20059-21582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20332-21064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0332 -2 1064 bp Feature: domain Description: GIIM Note: maturase Location: 21139-21337 bp Feature: domain Description: GIIM Note: maturase Location: 2 1139-2 1337 bp Feature: gene Location: 21747-21911 bp Feature: domain Description: PHA02517 Location: 21750-21840 bp Feature: domain Description: PHA02 517 Location: 2 1750-2 1840 bp Feature: gene Location: 22077-22490 bp Feature: domain Description: COG2085 Location: 22176-22323 bp Feature: domain Description: COG2 085 Location: 2 2 176-2 2 32 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG2085 (Predicted dinucleotide-binding enzyme )