myRT

myRT report for GCA_002485165.1_ASM248516v1

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Seq: NNUL01000016.1 Escherichia coli strain MOD1-EC6633 MOD1-EC6633_16_length_99155_cov_29.2921, whole genome shotgun sequence (99155 bp)
Overview 1 RT 1: 141-3351 bp Neighborhood of RT #1 [141, 3371] YhhI YhhI IS285 RVT-GII PRK15434 Feature: gene Location: 141-992 bp Feature: domain Description: YhhI Location: 144-504 bp Feature: domain Description: YhhI Location: 1 44-504 bp Feature: domain Description: YhhI Location: 564-918 bp Feature: domain Description: YhhI Location: 564-91 8 bp Feature: gene Location: 1096-1854 bp Feature: domain Description: IS285 Location: 1126-1816 bp Feature: domain Description: IS285 Location: 1 1 26-1 81 6 bp Feature: gene Location: 1903-2196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2074-2182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2074-21 82 bp Feature: gene Location: 2684-2869 bp Feature: gene Location: 2898-3371 bp Feature: domain Description: PRK15434 Location: 2901-3351 bp Feature: domain Description: PRK1 5434 Location: 2901 -3351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), YhhI (COG5433), RVT-GII, PRK15434 (GDP-mannose mannosyl hydrolase)

Seq: NNUL01000036.1 Escherichia coli strain MOD1-EC6633 MOD1-EC6633_36_length_45805_cov_32.871, whole genome shotgun sequence (45805 bp)
Overview 1 RT 1: 3-4062 bp Neighborhood of RT #1 [3, 4062] COG3378 RVT-Retrons TIR_2 Pox_D5 Feature: gene Location: 3-878 bp Feature: domain Description: COG3378 Location: 6-867 bp Feature: domain Description: COG3378 Location: 6-867 bp Feature: gene Location: 1162-1296 bp Feature: gene Location: 1472-3103 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1787-2384 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1787-2 384 bp Feature: domain Description: TIR_2 Location: 2708-3065 bp Feature: domain Description: TIR_2 Location: 2 708-3065 bp Feature: gene Location: 3341-3493 bp Feature: domain Description: Pox_D5 Location: 3344-3467 bp Feature: domain Description: Pox_D5 Location: 3344-3467 bp Feature: gene Location: 3880-4062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR_2 (pfam13676), Pox_D5 (pfam03288), COG3378 (Phage- or plasmid-associated DNA primase )

Seq: NNUL01000041.1 Escherichia coli strain MOD1-EC6633 MOD1-EC6633_41_length_37893_cov_33.7601, whole genome shotgun sequence (37893 bp)
Overview 1 RT 1: 24136-28018 bp Neighborhood of RT #1 [24136, 28023] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 24136-24852 bp Feature: domain Description: rph Location: 24139-24847 bp Feature: domain Description: rph Location: 2413 9-24847 bp Feature: gene Location: 24903-25559 bp Feature: domain Description: pyrE Location: 24921-25554 bp Feature: domain Description: pyrE Location: 24921-25554 bp Feature: gene Location: 25857-26816 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 25992-26541 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 25992-26541 bp Feature: gene Location: 26862-27458 bp Feature: domain Description: slmA Location: 26868-27444 bp Feature: domain Description: slmA Location: 26868-27444 bp Feature: gene Location: 27565-28023 bp Feature: domain Description: dut Location: 27571-28018 bp Feature: domain Description: dut Location: 27571-28018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)