myRT

myRT report for GCA_002485245.1_ASM248524v1

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Seq: NNUP01000014.1 Escherichia coli strain MOD1-EC6628 MOD1-EC6628_14_length_134475_cov_66.0478, whole genome shotgun sequence (134475 bp)
Overview 1 RT 1: 99746-104508 bp 2 RT 2: 128437-133187 bp Neighborhood of RT #1 [99746, 104594] Colicin_im Colicin_M RVT-GII GIIM YebF Phage_integrase Neighborhood of RT #2 [128437, 133187] Phage_int_SAM_1 INT_RitC_C_like PRK13699 RVT_N RVT-GII GIIM DUF1281 Feature: gene Location: 99746-100273 bp Feature: domain Description: Colicin_im Location: 99860-100271 bp Feature: domain Description: Colicin_im Location: 99860-1 00271 bp Feature: gene Location: 100517-101332 bp Feature: domain Description: Colicin_M Location: 100529-101330 bp Feature: domain Description: Colicin_M Location: 1 00529-1 01 330 bp Feature: gene Location: 101779-103131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102100-102718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 021 00-1 0271 8 bp Feature: domain Description: GIIM Note: maturase Location: 102766-102997 bp Feature: domain Description: GIIM Note: maturase Location: 1 02766-1 02997 bp Feature: gene Location: 103247-103600 bp Feature: domain Description: YebF Location: 103328-103589 bp Feature: domain Description: YebF Location: 1 03328-1 03589 bp Feature: gene Location: 103812-104594 bp Feature: domain Description: Phage_integrase Location: 103935-104508 bp Feature: domain Description: Phage_integrase Location: 1 03935-1 04508 bp Feature: gene Location: 128437-129453 bp Feature: domain Description: Phage_int_SAM_1 Location: 128485-128725 bp Feature: domain Description: Phage_int_SAM_1 Location: 1 28485-1 28725 bp Feature: domain Description: INT_RitC_C_like Location: 128818-129370 bp Feature: domain Description: INT_RitC_C_like Location: 1 2881 8-1 29370 bp Feature: gene Location: 129764-130315 bp Feature: domain Description: PRK13699 Location: 129809-130259 bp Feature: domain Description: PRK1 3699 Location: 1 29809-1 30259 bp Feature: gene Location: 130895-132502 bp Feature: RT Description: RVT_N Location: 130949-131192 bp Feature: RT Description: RVT_N Location: 1 30949-1 31 1 92 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131237-131873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 31 237-1 31 873 bp Feature: domain Description: GIIM Note: maturase Location: 131924-132158 bp Feature: domain Description: GIIM Note: maturase Location: 1 31 924-1 321 58 bp Feature: gene Location: 132765-132971 bp Feature: domain Description: DUF1281 Location: 132771-132939 bp Feature: domain Description: DUF1 281 Location: 1 32771 -1 32939 bp Feature: gene Location: 132963-133187 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Colicin_M (pfam14859), RVT-GII, GIIM (pfam08388), YebF (pfam13995), Phage_integrase (pfam00589), Colicin_im (pfam03857), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), PRK13699 (putative methylase; Provisional), RVT_N (pfam13655)
DUF1281 (pfam06924)