myRT

myRT report for GCA_002485305.1_ASM248530v1

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Seq: NNUS01000018.1 Escherichia coli strain MOD1-EC6623 MOD1-EC6623_18_length_107979_cov_43.0779, whole genome shotgun sequence (107979 bp)
Overview 1 RT 1: 21174-23657 bp Neighborhood of RT #1 [21174, 23657] PRK15121 PRK15121 GIIM RVT-GII Feature: gene Location: 21174-22007 bp Feature: domain Description: PRK15121 Location: 21189-21513 bp Feature: domain Description: PRK1 51 21 Location: 21 1 89-21 51 3 bp Feature: domain Description: PRK15121 Location: 21771-21972 bp Feature: domain Description: PRK1 51 21 Location: 21 771 -21 972 bp Feature: gene Location: 22032-22193 bp Feature: domain Description: GIIM Note: maturase Location: 22038-22188 bp Feature: domain Description: GIIM Note: maturase Location: 22038-221 88 bp Feature: gene Location: 22241-22720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22463-22682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22463-22682 bp Feature: gene Location: 22846-23211 bp Feature: gene Location: 23517-23657 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15121 (MDR efflux pump AcrAB transcriptional activator RobA), GIIM (pfam08388), RVT-GII

Seq: NNUS01000039.1 Escherichia coli strain MOD1-EC6623 MOD1-EC6623_39_length_35995_cov_35.0275, whole genome shotgun sequence (35995 bp)
Overview 1 RT 1: 30887-35848 bp Neighborhood of RT #1 [30887, 35994] mutS1 INT_Rci_Hp1_C INT_P4_C RVT-UG3 Feature: gene Location: 30887-33469 bp Feature: domain Description: mutS1 Location: 30938-33458 bp Feature: domain Description: mutS1 Location: 30938-33458 bp Feature: gene Location: 33614-35074 bp Feature: domain Description: INT_Rci_Hp1_C Location: 33989-34196 bp Feature: domain Description: INT_Rci_Hp1_C Location: 33989-34196 bp Feature: domain Description: INT_P4_C Location: 34415-34952 bp Feature: domain Description: INT_P4_C Location: 34415-34952 bp Feature: gene Location: 35071-35994 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 35353-35848 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 35353-35848 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT mutS1 (TIGR01070), INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), RVT-UG3

Seq: NNUS01000064.1 Escherichia coli strain MOD1-EC6623 MOD1-EC6623_64_length_5867_cov_40.52, whole genome shotgun sequence (5867 bp)
Overview 1 RT 1: 2346-5570 bp Neighborhood of RT #1 [2346, 5570] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2346-2582 bp Feature: gene Location: 2651-2911 bp Feature: gene Location: 3485-5152 bp Feature: domain Description: RVT_N Location: 3533-3770 bp Feature: domain Description: RVT_N Location: 3 53 3 -3 770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3821-4463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 821-4463 bp Feature: domain Description: GIIM Note: maturase Location: 4514-4748 bp Feature: domain Description: GIIM Note: maturase Location: 4514-4748 bp Feature: domain Description: HNHc Note: nucleases Location: 4958-5117 bp Feature: domain Description: HNHc Note: nucleases Location: 4958-5117 bp Feature: gene Location: 5307-5570 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NNUS01000068.1 Escherichia coli strain MOD1-EC6623 MOD1-EC6623_68_length_4163_cov_49.9611, whole genome shotgun sequence (4163 bp)
Overview 1 RT 1: 902-4158 bp Neighborhood of RT #1 [902, 4160] TnpB_IS66 RVT_N RVT-GII YkfC HNHc COG3436 Feature: gene Location: 902-1213 bp Feature: domain Description: TnpB_IS66 Location: 929-1208 bp Feature: domain Description: TnpB_IS66 Location: 929-1208 bp Feature: gene Location: 1420-1560 bp Feature: gene Location: 1811-3481 bp Feature: domain Description: RVT_N Location: 1859-2102 bp Feature: domain Description: RVT_N Location: 1859-2102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2147-2789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 214 7-2789 bp Feature: domain Description: YkfC Location: 2921-3161 bp Feature: domain Description: YkfC Location: 2921-3161 bp Feature: domain Description: HNHc Note: nucleases Location: 3287-3446 bp Feature: domain Description: HNHc Note: nucleases Location: 3287-34 4 6 bp Feature: gene Location: 3624-4160 bp Feature: domain Description: COG3436 Location: 3936-4158 bp Feature: domain Description: COG34 36 Location: 3936-4 158 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), COG3436 (Transposase )

Seq: NNUS01000079.1 Escherichia coli strain MOD1-EC6623 MOD1-EC6623_79_length_1392_cov_6.8943, whole genome shotgun sequence (1392 bp)
Overview 1 RT 1: 2-1022 bp Neighborhood of RT #1 [2, 1051] RVT-UG8 Feature: gene Location: 2-1051 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 572-1022 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 5 72-1022 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8