myRT

myRT report for GCA_002485615.1_ASM248561v1

Download annotations/find similar RTs

Seq: NNVI01000017.1 Escherichia coli strain MOD1-EC6534 MOD1-EC6534_17_length_116037_cov_22.8137, whole genome shotgun sequence (116037 bp)
Overview 1 RT 1: 9786-13668 bp Neighborhood of RT #1 [9786, 13673] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9786-10244 bp Feature: domain Description: dut Location: 9792-10239 bp Feature: domain Description: dut Location: 9792-1 0239 bp Feature: gene Location: 10351-10947 bp Feature: domain Description: slmA Location: 10357-10933 bp Feature: domain Description: slmA Location: 1 0357-1 0933 bp Feature: gene Location: 10993-11952 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11128-11677 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 1 28-1 1 677 bp Feature: gene Location: 12250-12906 bp Feature: domain Description: pyrE Location: 12268-12901 bp Feature: domain Description: pyrE Location: 1 2268-1 2901 bp Feature: gene Location: 12957-13673 bp Feature: domain Description: rph Location: 12960-13668 bp Feature: domain Description: rph Location: 1 2960-1 3668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NNVI01000049.1 Escherichia coli strain MOD1-EC6534 MOD1-EC6534_49_length_25717_cov_21.7098, whole genome shotgun sequence (25717 bp)
Overview 1 RT 1: 23376-25132 bp Neighborhood of RT #1 [23376, 25317] SmpB RVT-UG11 Feature: gene Location: 23376-23858 bp Feature: domain Description: SmpB Location: 23406-23853 bp Feature: domain Description: SmpB Location: 2 3406-2 3853 bp Feature: gene Location: 23992-24159 bp Feature: gene Location: 24544-25317 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 24679-25132 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2 4679-2 5132 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmpB (pfam01668), RVT-UG11

Seq: NNVI01000051.1 Escherichia coli strain MOD1-EC6534 MOD1-EC6534_51_length_24700_cov_15.663, whole genome shotgun sequence (24700 bp)
Overview 1 RT 1: 11421-14000 bp Neighborhood of RT #1 [11421, 14005] InsE RVT_N RVT-GII TnpB_IS66 Feature: gene Location: 11421-11840 bp Feature: domain Description: InsE Location: 11436-11820 bp Feature: domain Description: InsE Location: 1143 6-11820 bp Feature: gene Location: 11695-12111 bp Feature: gene Location: 12173-13096 bp Feature: domain Description: RVT_N Location: 12221-12464 bp Feature: domain Description: RVT_N Location: 12221-12464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12509-13079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12509-13 079 bp Feature: gene Location: 13123-13530 bp Feature: gene Location: 13694-14005 bp Feature: domain Description: TnpB_IS66 Location: 13721-14000 bp Feature: domain Description: TnpB_IS66 Location: 13 721-14000 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT_N (pfam13655), RVT-GII, TnpB_IS66 (pfam05717)

Seq: NNVI01000063.1 Escherichia coli strain MOD1-EC6534 MOD1-EC6534_63_length_14613_cov_12.2544, whole genome shotgun sequence (14613 bp)
Overview 1 RT 1: 2696-5337 bp Neighborhood of RT #1 [2696, 5337] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2696-2896 bp Feature: gene Location: 3010-3144 bp Feature: gene Location: 3169-4869 bp Feature: domain Description: RVT_N Location: 3223-3466 bp Feature: domain Description: RVT_N Location: 3223-34 66 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3511-4147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3511-4 14 7 bp Feature: domain Description: GIIM Note: maturase Location: 4198-4432 bp Feature: domain Description: GIIM Note: maturase Location: 4 198-4 4 32 bp Feature: domain Description: HNHc Note: nucleases Location: 4663-4813 bp Feature: domain Description: HNHc Note: nucleases Location: 4 663-4 813 bp Feature: gene Location: 4994-5158 bp Feature: gene Location: 5185-5337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NNVI01000068.1 Escherichia coli strain MOD1-EC6534 MOD1-EC6534_68_length_11104_cov_12.4709, whole genome shotgun sequence (11104 bp)
Overview 1 RT 1: 8761-10746 bp Neighborhood of RT #1 [8761, 10991] PHA02517 RVT-GII GIIM Feature: gene Location: 8761-9024 bp Feature: gene Location: 9082-9528 bp Feature: domain Description: PHA02517 Location: 9085-9526 bp Feature: domain Description: PHA025 17 Location: 9085 -95 26 bp Feature: gene Location: 9645-10991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9741-10473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9741-10473 bp Feature: domain Description: GIIM Note: maturase Location: 10548-10746 bp Feature: domain Description: GIIM Note: maturase Location: 105 48-10746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)