myRT

myRT report for GCA_002486255.1_ASM248625v1

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Seq: NNXI01000035.1 Escherichia coli strain MOD1-EC6303 MOD1-EC6303_35_length_39618_cov_67.96, whole genome shotgun sequence (39618 bp)
Overview 1 RT 1: 1407-5100 bp Neighborhood of RT #1 [1407, 5100] PRK13889 RVT-Retrons HTH_XRE Feature: gene Location: 1407-1610 bp Feature: gene Location: 1841-3343 bp Feature: domain Description: PRK13889 Location: 1844-2432 bp Feature: domain Description: PRK1 3889 Location: 1 844-2432 bp Feature: gene Location: 3420-4520 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3561-4116 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3561 -41 1 6 bp Feature: gene Location: 4513-4794 bp Feature: domain Description: HTH_XRE Location: 4528-4693 bp Feature: domain Description: HTH_XRE Location: 4528-4693 bp Feature: gene Location: 4885-5100 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530)

Seq: NNXI01000038.1 Escherichia coli strain MOD1-EC6303 MOD1-EC6303_38_length_37076_cov_57.1514, whole genome shotgun sequence (37076 bp)
Overview 1 RT 1: 31381-35486 bp Neighborhood of RT #1 [31381, 35486] DUF932 RVT-GII Intron_maturas2 HNHc DUF932 Feature: gene Location: 31381-31626 bp Feature: gene Location: 31626-32012 bp Feature: domain Description: DUF932 Location: 31632-31977 bp Feature: domain Description: DUF932 Location: 31632 -31977 bp Feature: gene Location: 32185-33963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32446-33241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 446-332 41 bp Feature: domain Description: Intron_maturas2 Location: 33367-33592 bp Feature: domain Description: Intron_maturas2 Location: 33367-33592 bp Feature: domain Description: HNHc Note: nucleases Location: 33787-33937 bp Feature: domain Description: HNHc Note: nucleases Location: 33787-33937 bp Feature: gene Location: 34455-34856 bp Feature: domain Description: DUF932 Location: 34566-34848 bp Feature: domain Description: DUF932 Location: 34566-34848 bp Feature: gene Location: 35076-35486 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)