myRT

myRT report for GCA_002486325.1_ASM248632v1

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Seq: NNYQ01000024.1 Escherichia coli strain MOD1-EC6136 MOD1-EC6136_24_length_69990_cov_10.2559, whole genome shotgun sequence (69990 bp)
Overview 1 RT 1: 66723-69776 bp Neighborhood of RT #1 [66723, 69776] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 66723-67145 bp Feature: domain Description: DUF1380 Location: 66726-67023 bp Feature: domain Description: DUF1 380 Location: 66726-67023 bp Feature: gene Location: 67197-67532 bp Feature: gene Location: 67647-69314 bp Feature: domain Description: RVT_N Location: 67695-67932 bp Feature: domain Description: RVT_N Location: 67695-67932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67983-68625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67983-68625 bp Feature: domain Description: GIIM Note: maturase Location: 68676-68910 bp Feature: domain Description: GIIM Note: maturase Location: 68676-6891 0 bp Feature: domain Description: HNHc Note: nucleases Location: 69120-69279 bp Feature: domain Description: HNHc Note: nucleases Location: 691 20-69279 bp Feature: gene Location: 69594-69776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NNYQ01000053.1 Escherichia coli strain MOD1-EC6136 MOD1-EC6136_53_length_23720_cov_9.72897, whole genome shotgun sequence (23720 bp)
Overview 1 RT 1: 20047-23719 bp Neighborhood of RT #1 [20047, 23719] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 20047-20280 bp Feature: domain Description: DUF905 Location: 20077-20275 bp Feature: domain Description: DUF905 Location: 2 0077-2 02 75 bp Feature: gene Location: 20338-20778 bp Feature: domain Description: PRK13732 Location: 20344-20776 bp Feature: domain Description: PRK13732 Location: 2 0344-2 0776 bp Feature: gene Location: 20973-22874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21240-22071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 12 40-2 2 071 bp Feature: domain Description: Intron_maturas2 Location: 22185-22443 bp Feature: domain Description: Intron_maturas2 Location: 2 2 185-2 2 443 bp Feature: domain Description: HNHc Note: nucleases Location: 22617-22779 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 617-2 2 779 bp Feature: gene Location: 23552-23719 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NNYQ01000007.1 Escherichia coli strain MOD1-EC6136 MOD1-EC6136_7_length_156388_cov_29.7421, whole genome shotgun sequence (156388 bp)
Overview 1 RT 1: 22292-28535 bp Neighborhood of RT #1 [22292, 28672] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22292-22558 bp Feature: domain Description: Phage_integrase Location: 22358-22454 bp Feature: domain Description: Phage_integrase Location: 223 58-22454 bp Feature: gene Location: 22641-23111 bp Feature: gene Location: 23458-26667 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23986-24475 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23 986-24475 bp Feature: domain Description: nitrilase Location: 25981-26578 bp Feature: domain Description: nitrilase Location: 25981-26578 bp Feature: gene Location: 26962-27765 bp Feature: domain Description: AbiEi_3_N Location: 26995-27256 bp Feature: domain Description: AbiEi_3 _N Location: 26995-27256 bp Feature: domain Description: AbiEi_3 Location: 27268-27724 bp Feature: domain Description: AbiEi_3 Location: 27268-27724 bp Feature: gene Location: 27752-28672 bp Feature: domain Description: AbiEii Location: 27794-28535 bp Feature: domain Description: AbiEii Location: 27794-2853 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)