myRT

myRT report for GCA_002486895.1_ASM248689v1

Download annotations/find similar RTs

Seq: NNXC01000014.1 Escherichia coli strain MOD1-EC6309 MOD1-EC6309_14_length_116286_cov_26.6359, whole genome shotgun sequence (116286 bp)
Overview 1 RT 1: 99086-102838 bp Neighborhood of RT #1 [99086, 103047] DinI RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 99086-99319 bp Feature: domain Description: DinI Location: 99128-99314 bp Feature: domain Description: DinI Location: 991 28-9931 4 bp Feature: gene Location: 99488-99622 bp Feature: gene Location: 99798-100733 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 99900-100494 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 99900-1 00494 bp Feature: gene Location: 100733-102367 bp Feature: domain Description: COG3950 Location: 100871-102329 bp Feature: domain Description: COG3950 Location: 1 00871 -1 02329 bp Feature: gene Location: 102487-103047 bp Feature: domain Description: TIGR02646 Location: 102490-102838 bp Feature: domain Description: TIGR02646 Location: 1 02490-1 02838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: NNXC01000019.1 Escherichia coli strain MOD1-EC6309 MOD1-EC6309_19_length_72485_cov_26.5664, whole genome shotgun sequence (72485 bp)
Overview 1 RT 1: 61874-66166 bp Neighborhood of RT #1 [61874, 66327] cbl RVT-UG12 Phage_int_SAM_2 Integrase_1 Feature: gene Location: 61874-62824 bp Feature: domain Description: cbl Location: 61877-62822 bp Feature: domain Description: cbl Location: 61877-62 82 2 bp Feature: gene Location: 63142-63360 bp Feature: gene Location: 63552-64847 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 63903-64338 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 63903-64338 bp Feature: gene Location: 64844-65107 bp Feature: gene Location: 65416-66327 bp Feature: domain Description: Phage_int_SAM_2 Location: 65419-65689 bp Feature: domain Description: Phage_int_SAM_2 Location: 65419-65689 bp Feature: domain Description: Integrase_1 Location: 65722-66166 bp Feature: domain Description: Integrase_1 Location: 6572 2 -66166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cbl (PRK12679), RVT-UG12, Phage_int_SAM_2 (pfam12834), Integrase_1 (pfam12835)

Seq: NNXC01000068.1 Escherichia coli strain MOD1-EC6309 MOD1-EC6309_68_length_8261_cov_26.5883, whole genome shotgun sequence (8261 bp)
Overview 1 RT 1: 517-7239 bp Neighborhood of RT #1 [517, 7239] INT_Rci_Hp1_C PRK09692 RVT-UG3 RVT-UG8 Feature: gene Location: 517-1620 bp Feature: domain Description: INT_Rci_Hp1_C Location: 1108-1585 bp Feature: domain Description: INT_Rci_Hp1_C Location: 1108-1585 bp Feature: gene Location: 1892-3076 bp Feature: domain Description: PRK09692 Location: 1898-3050 bp Feature: domain Description: PRK09692 Location: 1898-3 050 bp Feature: gene Location: 3255-4538 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3543-4050 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3 543 -4050 bp Feature: gene Location: 4535-6496 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 5054-5501 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 5054-5501 bp Feature: gene Location: 6746-6895 bp Feature: gene Location: 7084-7239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Rci_Hp1_C (cd00796), PRK09692 (Integrase; provisional), RVT-UG3, RVT-UG8