myRT

myRT report for GCA_002487145.1_ASM248714v1

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Seq: NNXS01000028.1 Escherichia coli strain MOD1-EC6269 MOD1-EC6269_28_length_56144_cov_35.5153, whole genome shotgun sequence (56144 bp)
Overview 1 RT 1: 28197-31946 bp Neighborhood of RT #1 [28197, 31951] D PRK09678 RVT-UG11 SmpB Feature: gene Location: 28197-29297 bp Feature: domain Description: D Location: 28203-29286 bp Feature: domain Description: D Location: 28203-29286 bp Feature: gene Location: 29388-29606 bp Feature: domain Description: PRK09678 Location: 29391-29589 bp Feature: domain Description: PRK09678 Location: 29391 -29589 bp Feature: gene Location: 30010-30783 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 30145-30598 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 301 45-30598 bp Feature: gene Location: 31168-31335 bp Feature: gene Location: 31469-31951 bp Feature: domain Description: SmpB Location: 31499-31946 bp Feature: domain Description: SmpB Location: 31 499-31 946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668)

Seq: NNXS01000036.1 Escherichia coli strain MOD1-EC6269 MOD1-EC6269_36_length_42046_cov_38.2086, whole genome shotgun sequence (42046 bp)
Overview 1 RT 1: 4579-8138 bp Neighborhood of RT #1 [4579, 8138] PHA02517 RVT-GII GIIM Feature: gene Location: 4579-5202 bp Feature: gene Location: 5381-5821 bp Feature: domain Description: PHA02517 Location: 5384-5786 bp Feature: domain Description: PHA02 517 Location: 5384-5786 bp Feature: gene Location: 5950-7473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6223-6955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 2 3-6955 bp Feature: domain Description: GIIM Note: maturase Location: 7030-7228 bp Feature: domain Description: GIIM Note: maturase Location: 7030-72 2 8 bp Feature: gene Location: 7544-7852 bp Feature: gene Location: 7887-8138 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)