myRT

myRT report for GCA_002490775.1_ASM249077v1

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Seq: DKUR01000067.1 TPA_asm: Lachnospiraceae bacterium UBA7199 UBA7199_contig_2186, whole genome shotgun sequence (17468 bp)
Overview 1 RT 1: 1-3255 bp Neighborhood of RT #1 [1, 3641] PHA00653 RVT-DGRs Phage_holin_4_1 PGRP Phage_lysozyme2 Feature: gene Location: 1-294 bp Feature: domain Description: PHA00653 Location: 85-235 bp Feature: domain Description: PHA00653 Location: 85-235 bp Feature: gene Location: 403-1464 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 640-1261 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 640-1 261 bp Feature: gene Location: 1665-2153 bp Feature: domain Description: Phage_holin_4_1 Location: 1704-2064 bp Feature: domain Description: Phage_holin_4_1 Location: 1 704-2064 bp Feature: gene Location: 2232-3641 bp Feature: domain Description: PGRP Location: 2289-2691 bp Feature: domain Description: PGRP Location: 2289-2691 bp Feature: domain Description: Phage_lysozyme2 Location: 2772-3255 bp Feature: domain Description: Phage_lysozyme2 Location: 2772-3255 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00653 (mtd;major tropism determinant), Phage_holin_4_1 (pfam05105), PGRP (smart00701), Phage_lysozyme2 (pfam18013), RVT-DGRs

Seq: DKUR01000020.1 TPA_asm: Lachnospiraceae bacterium UBA7199 UBA7199_contig_463, whole genome shotgun sequence (46391 bp)
Overview 1 RT 1: 37192-39692 bp Neighborhood of RT #1 [37192, 39703] RVT-DGRs Phage_XkdX Feature: gene Location: 37192-37605 bp Feature: gene Location: 37577-37792 bp Feature: gene Location: 37998-39152 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38274-38877 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 382 74-38877 bp Feature: gene Location: 39133-39513 bp Feature: gene Location: 39527-39703 bp Feature: domain Description: Phage_XkdX Location: 39563-39692 bp Feature: domain Description: Phage_XkdX Location: 39563-39692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_XkdX (pfam09693)

Seq: DKUR01000111.1 TPA_asm: Lachnospiraceae bacterium UBA7199 UBA7199_contig_837, whole genome shotgun sequence (69855 bp)
Overview 1 RT 1: 27305-32445 bp Neighborhood of RT #1 [27305, 32456] YoaP PRK10562 RVT-Retrons AIM24 DppC Feature: gene Location: 27305-28048 bp Feature: domain Description: YoaP Location: 27908-28037 bp Feature: domain Description: YoaP Location: 27908-2803 7 bp Feature: gene Location: 28327-28755 bp Feature: domain Description: PRK10562 Location: 28330-28747 bp Feature: domain Description: PRK10562 Location: 283 3 0-28747 bp Feature: gene Location: 28803-30512 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28926-29529 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28926-29529 bp Feature: gene Location: 30779-31459 bp Feature: domain Description: AIM24 Location: 30782-31445 bp Feature: domain Description: AIM24 Location: 3 0782-3 1445 bp Feature: gene Location: 31488-32456 bp Feature: domain Description: DppC Location: 31659-32445 bp Feature: domain Description: DppC Location: 3 1659-3 2445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YoaP (pfam14268), PRK10562 (putative acetyltransferase; Provisional), RVT-Retrons, AIM24 (pfam01987), DppC (COG1173)