myRT

myRT report for GCA_002493635.1_ASM249363v1

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Seq: DKZL01000001.1 TPA_asm: Ruminococcaceae bacterium UBA7075 UBA7075_contig_12111, whole genome shotgun sequence (3261 bp)
Overview 1 RT 1: 193-3054 bp Neighborhood of RT #1 [193, 3191] HTH_36 TraG-D_C RVT-GII HNHc Feature: gene Location: 193-627 bp Feature: domain Description: HTH_36 Location: 406-562 bp Feature: domain Description: HTH_36 Location: 406-562 bp Feature: gene Location: 443-1282 bp Feature: domain Description: TraG-D_C Location: 551-872 bp Feature: domain Description: TraG-D_C Location: 551 -872 bp Feature: gene Location: 1320-3191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1635-2364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 635-2364 bp Feature: domain Description: HNHc Note: nucleases Location: 2931-3054 bp Feature: domain Description: HNHc Note: nucleases Location: 2931 -3054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), HTH_36 (pfam13730), TraG-D_C (pfam12696)

Seq: DKZL01000023.1 TPA_asm: Ruminococcaceae bacterium UBA7075 UBA7075_contig_3904, whole genome shotgun sequence (28160 bp)
Overview 1 RT 1: 2-1594 bp Neighborhood of RT #1 [2, 1594] RVT-DGRs Feature: gene Location: 2-151 bp Feature: gene Location: 481-1023 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 502-781 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 502 -781 bp Feature: gene Location: 1029-1289 bp Feature: gene Location: 1466-1594 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: DKZL01000010.1 TPA_asm: Ruminococcaceae bacterium UBA7075 UBA7075_contig_410, whole genome shotgun sequence (67045 bp)
Overview 1 RT 1: 62188-66787 bp Neighborhood of RT #1 [62188, 66906] dnaG DUF3991 Toprim_2 VirD4 RVT-GII HNHc Feature: gene Location: 62188-63189 bp Feature: domain Description: dnaG Location: 62380-62461 bp Feature: domain Description: dnaG Location: 623 80-62461 bp Feature: domain Description: DUF3991 Location: 62551-62773 bp Feature: domain Description: DUF3 991 Location: 62551-62773 bp Feature: domain Description: Toprim_2 Location: 62788-63142 bp Feature: domain Description: Toprim_2 Location: 62788-63 142 bp Feature: gene Location: 63171-64361 bp Feature: domain Description: VirD4 Location: 63198-64341 bp Feature: domain Description: VirD4 Location: 63 198-643 41 bp Feature: gene Location: 65047-66906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65347-66088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 653 47-66088 bp Feature: domain Description: HNHc Note: nucleases Location: 66655-66787 bp Feature: domain Description: HNHc Note: nucleases Location: 66655-66787 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), DUF3991 (pfam13154), Toprim_2 (pfam13155), VirD4 (COG3505), RVT-GII, HNHc (smart00507)