myRT

myRT report for GCA_002493835.1_ASM249383v1

Download annotations/find similar RTs

Seq: DLAA01000136.1 TPA_asm: Lachnospiraceae bacterium UBA7060 UBA7060_contig_1410, whole genome shotgun sequence (62190 bp)
Overview 1 RT 1: 27696-30552 bp Neighborhood of RT #1 [27696, 30552] Avd_like RVT-DGRs Feature: gene Location: 27696-28151 bp Feature: domain Description: Avd_like Location: 27780-28098 bp Feature: domain Description: Avd_like Location: 27780-28098 bp Feature: gene Location: 28216-28455 bp Feature: gene Location: 28507-29697 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 28801-29461 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 28801 -29461 bp Feature: gene Location: 29675-30175 bp Feature: gene Location: 30172-30552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs

Seq: DLAA01000076.1 TPA_asm: Lachnospiraceae bacterium UBA7060 UBA7060_contig_1869, whole genome shotgun sequence (37358 bp)
Overview 1 RT 1: 682-4899 bp Neighborhood of RT #1 [682, 4904] UDG RVT-GII SpoIID_LytB SpoIID_LytB PG_binding_1 PG_binding_1 LysM LysM Feature: gene Location: 682-1098 bp Feature: domain Description: UDG Location: 874-1087 bp Feature: domain Description: UDG Location: 874-1087 bp Feature: gene Location: 1099-1296 bp Feature: gene Location: 1335-1958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1509-1791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1509-1791 bp Feature: gene Location: 2017-2619 bp Feature: gene Location: 3063-4904 bp Feature: domain Description: SpoIID_LytB Location: 3570-3738 bp Feature: domain Description: SpoIID_LytB Location: 3570-3738 bp Feature: domain Description: SpoIID_LytB Location: 3894-3972 bp Feature: domain Description: SpoIID_LytB Location: 3894-3972 bp Feature: domain Description: PG_binding_1 Location: 4056-4239 bp Feature: domain Description: PG_binding_1 Location: 4056-42 39 bp Feature: domain Description: PG_binding_1 Location: 4347-4530 bp Feature: domain Description: PG_binding_1 Location: 4347-4530 bp Feature: domain Description: LysM Location: 4617-4743 bp Feature: domain Description: LysM Location: 4617-4743 bp Feature: domain Description: LysM Location: 4773-4899 bp Feature: domain Description: LysM Location: 4773-4899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UDG (smart00986), RVT-GII, SpoIID_LytB (TIGR02669), PG_binding_1 (pfam01471), LysM (smart00257)

Seq: DLAA01000017.1 TPA_asm: Lachnospiraceae bacterium UBA7060 UBA7060_contig_722, whole genome shotgun sequence (131229 bp)
Overview 1 RT 1: 92514-98789 bp Neighborhood of RT #1 [92514, 98794] PRK07274 RVT-GII PinE Zn_ribbon_recom Recombinase RVT-GII threonine_DH_like Feature: gene Location: 92514-92678 bp Feature: gene Location: 92848-93228 bp Feature: domain Description: PRK07274 Location: 92872-93208 bp Feature: domain Description: PRK07274 Location: 92872-93 208 bp Feature: gene Location: 93888-94193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94092-94140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94092-94140 bp Feature: gene Location: 94220-96265 bp Feature: domain Description: PinE Location: 94286-94973 bp Feature: domain Description: PinE Location: 94286-94973 bp Feature: domain Description: Zn_ribbon_recom Location: 95234-95408 bp Feature: domain Description: Zn_ribbon_recom Location: 9523 4-95408 bp Feature: domain Description: Recombinase Location: 95954-96053 bp Feature: domain Description: Recombinase Location: 95954-96053 bp Feature: gene Location: 96395-96754 bp Feature: gene Location: 96794-97108 bp Feature: gene Location: 97201-97488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97207-97402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97207-97402 bp Feature: gene Location: 97945-98103 bp Feature: gene Location: 98531-98794 bp Feature: domain Description: threonine_DH_like Location: 98537-98789 bp Feature: domain Description: threonine_DH_like Location: 9853 7-98789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07274 (single-stranded DNA-binding protein; Provisional), RVT-GII, PinE (COG1961), Zn_ribbon_recom (pfam13408), Recombinase (pfam07508), threonine_DH_like (cd08234)

Seq: DLAA01000175.1 TPA_asm: Lachnospiraceae bacterium UBA7060 UBA7060_contig_9450, whole genome shotgun sequence (39116 bp)
Overview 1 RT 1: 32934-36963 bp Neighborhood of RT #1 [32934, 36963] PRK05579 ispF RVT-UG2 Feature: gene Location: 32934-34139 bp Feature: domain Description: PRK05579 Location: 32940-34119 bp Feature: domain Description: PRK05579 Location: 3294 0-34 119 bp Feature: gene Location: 34161-34694 bp Feature: domain Description: ispF Location: 34164-34626 bp Feature: domain Description: ispF Location: 34 164 -34 626 bp Feature: gene Location: 34699-36045 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 34906-35746 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 34 906-3574 6 bp Feature: gene Location: 36119-36340 bp Feature: gene Location: 36784-36963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05579 (bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated), ispF (TIGR00151), RVT-UG2