myRT

myRT report for GCA_002501025.1_ASM250102v1

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Seq: DLRD01000020.1 TPA_asm: Pseudomonas kunmingensis isolate UBA7897 UBA7897_contig_94, whole genome shotgun sequence (290600 bp)
Overview 1 RT 1: 81001-87421 bp 2 RT 2: 272172-277512 bp Neighborhood of RT #1 [81001, 87432] PRK08665 NrdJ_Z RVT_N RVT-GII GIIM HNHc rpmG RpmB Neighborhood of RT #2 [272172, 277526] COG3666 DDE_Tnp_1 RVT-UG17 INT_RitA_C_like INT_RitA_C_like Feature: gene Location: 81001-81708 bp Feature: domain Description: PRK08665 Location: 81094-81706 bp Feature: domain Description: PRK08665 Location: 81 094-81 706 bp Feature: gene Location: 81770-83920 bp Feature: domain Description: NrdJ_Z Location: 81854-83750 bp Feature: domain Description: NrdJ_Z Location: 81 854-83750 bp Feature: gene Location: 84184-85890 bp Feature: domain Description: RVT_N Location: 84241-84484 bp Feature: domain Description: RVT_N Location: 84241 -84484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84529-85165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84529-851 65 bp Feature: domain Description: GIIM Note: maturase Location: 85216-85450 bp Feature: domain Description: GIIM Note: maturase Location: 8521 6-85450 bp Feature: domain Description: HNHc Note: nucleases Location: 85660-85834 bp Feature: domain Description: HNHc Note: nucleases Location: 85660-85834 bp Feature: gene Location: 87092-87247 bp Feature: domain Description: rpmG Location: 87095-87239 bp Feature: domain Description: rpmG Location: 87095-87239 bp Feature: gene Location: 87259-87432 bp Feature: domain Description: RpmB Location: 87262-87421 bp Feature: domain Description: RpmB Location: 87262-87421 bp Feature: gene Location: 272172-272321 bp Feature: gene Location: 272719-274149 bp Feature: domain Description: COG3666 Location: 272731-273208 bp Feature: domain Description: COG3666 Location: 272731 -273208 bp Feature: domain Description: DDE_Tnp_1 Location: 273397-274093 bp Feature: domain Description: DDE_Tnp_1 Location: 273397-274093 bp Feature: gene Location: 275303-276739 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 275573-276185 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 275573-2761 85 bp Feature: gene Location: 276906-277304 bp Feature: domain Description: INT_RitA_C_like Location: 276984-277296 bp Feature: domain Description: INT_RitA_C_like Location: 276984-277296 bp Feature: gene Location: 277371-277526 bp Feature: domain Description: INT_RitA_C_like Location: 277374-277512 bp Feature: domain Description: INT_RitA_C_like Location: 277374-27751 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08665 (vitamin B12-dependent ribonucleotide reductase), NrdJ_Z (TIGR02504), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), rpmG (PRK00595), RpmB (COG0227), COG3666 (Transposase ), DDE_Tnp_1 (pfam01609)
RVT-UG17, INT_RitA_C_like (cd01188)