myRT

myRT report for GCA_002503825.1_ASM250382v1

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Seq: DASP01000012.1 TPA_asm: Methanoregulaceae archaeon UBA467 UBA467_contig_259, whole genome shotgun sequence (361229 bp)
Overview 1 RT 1: 288440-292502 bp Neighborhood of RT #1 [288440, 292525] COG5421 RVT_N RVT-GII GIIM COG5421 TIGR03833 Feature: gene Location: 288440-289705 bp Feature: domain Description: COG5421 Location: 288473-289583 bp Feature: domain Description: COG5421 Location: 288473-289583 bp Feature: gene Location: 289747-290139 bp Feature: gene Location: 290125-291606 bp Feature: RT Description: RVT_N Location: 290194-290431 bp Feature: RT Description: RVT_N Location: 2901 94-290431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 290482-291103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 290482-291 1 03 bp Feature: domain Description: GIIM Note: maturase Location: 291157-291388 bp Feature: domain Description: GIIM Note: maturase Location: 291 1 57-291 388 bp Feature: gene Location: 291663-291980 bp Feature: domain Description: COG5421 Location: 291696-291969 bp Feature: domain Description: COG5421 Location: 291 696-291 969 bp Feature: gene Location: 292223-292525 bp Feature: domain Description: TIGR03833 Location: 292322-292502 bp Feature: domain Description: TIGR03833 Location: 292322-292502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5421 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TIGR03833 (conserved hypothetical protein)

Seq: DASP01000002.1 TPA_asm: Methanoregulaceae archaeon UBA467 UBA467_contig_667, whole genome shotgun sequence (175780 bp)
Overview 1 RT 1: 47539-57646 bp Neighborhood of RT #1 [47539, 57714] Ugd GT4_TuaH-like RVT_N RVT-GII YkfC RVT_N RVT-GII YkfC GT4_MtfB-like DnaJ_CXXCXGXG DnaJ_CXXCXGXG Feature: gene Location: 47539-48813 bp Feature: domain Description: Ugd Location: 47554-48772 bp Feature: domain Description: Ugd Location: 47554-48772 bp Feature: gene Location: 48951-50090 bp Feature: domain Description: GT4_TuaH-like Location: 49362-49827 bp Feature: domain Description: GT4_TuaH-like Location: 49362 -4982 7 bp Feature: gene Location: 50396-51883 bp Feature: RT Description: RVT_N Location: 50465-50705 bp Feature: RT Description: RVT_N Location: 50465-50705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50753-51371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50753-51371 bp Feature: domain Description: YkfC Location: 51371-51749 bp Feature: domain Description: YkfC Location: 51371-51749 bp Feature: gene Location: 51978-52172 bp Feature: gene Location: 52447-52599 bp Feature: gene Location: 54196-54327 bp Feature: gene Location: 54327-54542 bp Feature: gene Location: 54639-56126 bp Feature: RT Description: RVT_N Location: 54708-54951 bp Feature: RT Description: RVT_N Location: 54708-54951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54996-55614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54996-55614 bp Feature: domain Description: YkfC Location: 55614-55998 bp Feature: domain Description: YkfC Location: 55614-55998 bp Feature: gene Location: 56289-57362 bp Feature: domain Description: GT4_MtfB-like Location: 56337-57324 bp Feature: domain Description: GT4_MtfB-like Location: 56337-5732 4 bp Feature: gene Location: 57430-57714 bp Feature: domain Description: DnaJ_CXXCXGXG Location: 57448-57502 bp Feature: domain Description: DnaJ_CXXCXGXG Location: 57448-57502 bp Feature: domain Description: DnaJ_CXXCXGXG Location: 57607-57646 bp Feature: domain Description: DnaJ_CXXCXGXG Location: 57607-57646 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ugd (COG1004), GT4_TuaH-like (cd04950), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), GT4_MtfB-like (cd03809), DnaJ_CXXCXGXG (pfam00684)