myRT

myRT report for GCA_002510165.1_ASM251016v1

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Seq: NXKR01000015.1 Escherichia coli strain ST-131:E011 NODE_15_length_122546_cov_20.9447, whole genome shotgun sequence (122546 bp)
Overview 1 RT 1: 65959-68735 bp Neighborhood of RT #1 [65959, 68735] RVT-Retrons Feature: gene Location: 65959-66126 bp Feature: gene Location: 66148-66693 bp Feature: gene Location: 66687-67919 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66846-67464 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66846-67464 bp Feature: gene Location: 68140-68283 bp Feature: gene Location: 68475-68735 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: NXKR01000056.1 Escherichia coli strain ST-131:E011 NODE_56_length_14355_cov_69.5063, whole genome shotgun sequence (14355 bp)
Overview 1 RT 1: 9439-13881 bp Neighborhood of RT #1 [9439, 13883] umuC PRK10276 RVT-GII InsA DDE_Tnp_IS1 Feature: gene Location: 9439-10710 bp Feature: domain Description: umuC Location: 9442-10702 bp Feature: domain Description: umuC Location: 9442 -10702 bp Feature: gene Location: 10710-11522 bp Feature: domain Description: PRK10276 Location: 11142-11505 bp Feature: domain Description: PRK102 76 Location: 11142 -11505 bp Feature: gene Location: 11547-13034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11952-12642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11952 -12 642 bp Feature: gene Location: 13186-13461 bp Feature: domain Description: InsA Location: 13189-13453 bp Feature: domain Description: InsA Location: 13189-13453 bp Feature: gene Location: 13380-13883 bp Feature: domain Description: DDE_Tnp_IS1 Location: 13491-13881 bp Feature: domain Description: DDE_Tnp_IS1 Location: 13491-13881 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, InsA (COG3677), DDE_Tnp_IS1 (pfam03400)

Seq: NXKR01000060.1 Escherichia coli strain ST-131:E011 NODE_60_length_11760_cov_22.3704, whole genome shotgun sequence (11760 bp)
Overview 1 RT 1: 396-5285 bp Neighborhood of RT #1 [396, 5287] Macro_Appr_pase Caudo_TAP RVT-UG17 SLATT_5 PRK11440 Feature: gene Location: 396-1298 bp Feature: domain Description: Macro_Appr_pase Location: 414-927 bp Feature: domain Description: Macro_Appr_pase Location: 414-927 bp Feature: gene Location: 1307-1891 bp Feature: domain Description: Caudo_TAP Location: 1523-1880 bp Feature: domain Description: Caudo_TAP Location: 1523 -1880 bp Feature: gene Location: 2075-3373 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2303-2909 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 23 03 -2909 bp Feature: gene Location: 3455-4054 bp Feature: domain Description: SLATT_5 Location: 3617-4013 bp Feature: domain Description: SLATT_5 Location: 3 617-4013 bp Feature: gene Location: 4721-5287 bp Feature: domain Description: PRK11440 Location: 4724-5285 bp Feature: domain Description: PRK11440 Location: 4724-5285 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Macro_Appr_pase (cd02900), Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160), PRK11440 (putative hydrolase; Provisional)

Seq: NXKR01000097.1 Escherichia coli strain ST-131:E011 NODE_97_length_2663_cov_111.063, whole genome shotgun sequence (2663 bp)
Overview 1 RT 1: 149-1955 bp Neighborhood of RT #1 [149, 2050] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 149-2050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416-1247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 16-124 7 bp Feature: domain Description: Intron_maturas2 Location: 1361-1619 bp Feature: domain Description: Intron_maturas2 Location: 1361-1619 bp Feature: domain Description: HNHc Note: nucleases Location: 1793-1955 bp Feature: domain Description: HNHc Note: nucleases Location: 1793-1955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)