myRT

myRT report for GCA_002510175.1_ASM251017v1

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Seq: NXKS01000046.1 Escherichia coli strain ST-410:K011 NODE_46_length_20225_cov_57.9566_ID_91, whole genome shotgun sequence (20225 bp)
Overview 1 RT 1: 1111-3622 bp Neighborhood of RT #1 [1111, 3622] RVT-UG17 SLATT_5 Feature: gene Location: 1111-1248 bp Feature: gene Location: 1264-1398 bp Feature: gene Location: 1506-2876 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1734-2340 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 734-2340 bp Feature: gene Location: 2854-3405 bp Feature: domain Description: SLATT_5 Location: 2860-3376 bp Feature: domain Description: SLATT_5 Location: 2860-3376 bp Feature: gene Location: 3443-3622 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, SLATT_5 (pfam18160)

Seq: NXKS01000072.1 Escherichia coli strain ST-410:K011 NODE_72_length_5729_cov_128.137_ID_143, whole genome shotgun sequence (5729 bp)
Overview 1 RT 1: 1739-5728 bp Neighborhood of RT #1 [1739, 5728] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1739-1972 bp Feature: domain Description: DUF905 Location: 1769-1967 bp Feature: domain Description: DUF905 Location: 1769-1967 bp Feature: gene Location: 2040-2492 bp Feature: domain Description: PRK13732 Location: 2046-2490 bp Feature: domain Description: PRK13732 Location: 2 046-2 490 bp Feature: gene Location: 2687-4588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2954-3785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 954-3785 bp Feature: domain Description: Intron_maturas2 Location: 3899-4157 bp Feature: domain Description: Intron_maturas2 Location: 3899-4157 bp Feature: domain Description: HNHc Note: nucleases Location: 4331-4493 bp Feature: domain Description: HNHc Note: nucleases Location: 4331-4493 bp Feature: gene Location: 5266-5472 bp Feature: gene Location: 5474-5728 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NXKS01000007.1 Escherichia coli strain ST-410:K011 NODE_7_length_183938_cov_64.5762_ID_13, whole genome shotgun sequence (183938 bp)
Overview 1 RT 1: 130938-134821 bp Neighborhood of RT #1 [130938, 134826] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 130938-131654 bp Feature: domain Description: rph Location: 130941-131649 bp Feature: domain Description: rph Location: 13 0941-13 1649 bp Feature: gene Location: 131706-132362 bp Feature: domain Description: pyrE Location: 131724-132357 bp Feature: domain Description: pyrE Location: 13 1724-13 23 57 bp Feature: gene Location: 132660-133619 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 132795-133344 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13 2795-13 3 3 44 bp Feature: gene Location: 133665-134261 bp Feature: domain Description: slmA Location: 133671-134247 bp Feature: domain Description: slmA Location: 13 3 671-13 4247 bp Feature: gene Location: 134368-134826 bp Feature: domain Description: dut Location: 134374-134821 bp Feature: domain Description: dut Location: 13 43 74-13 4821 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)