myRT

myRT report for GCA_002510215.1_ASM251021v1

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Seq: NXKU01000127.1 Klebsiella pneumoniae strain ST-1552:K038 NODE_127_length_13541_cov_29.1423_ID_253, whole genome shotgun sequence (13541 bp)
Overview 1 RT 1: 2752-7488 bp Neighborhood of RT #1 [2752, 7488] INT_P4_C RVT-UG3 RVT-UG8 InsE Feature: gene Location: 2752-3177 bp Feature: domain Description: INT_P4_C Location: 2755-3175 bp Feature: domain Description: INT_P4_C Location: 2755-31 75 bp Feature: gene Location: 3217-3672 bp Feature: gene Location: 3731-4444 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3734-3974 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3734-3974 bp Feature: gene Location: 4445-6445 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4949-5393 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4949-5393 bp Feature: gene Location: 6975-7277 bp Feature: domain Description: InsE Location: 6987-7227 bp Feature: domain Description: InsE Location: 6987-7227 bp Feature: gene Location: 7300-7488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), RVT-UG3, RVT-UG8, InsE (COG2963)

Seq: NXKU01000403.1 Klebsiella pneumoniae strain ST-1552:K038 NODE_405_length_1914_cov_163.657_ID_809, whole genome shotgun sequence (1908 bp)
Overview 1 RT 1: 3-1461 bp Neighborhood of RT #1 [3, 1853] RVT-GII Feature: gene Location: 3-212 bp Feature: gene Location: 366-1853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 771-1461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 771-1461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NXKU01000089.1 Klebsiella pneumoniae strain ST-1552:K038 NODE_89_length_18881_cov_34.9665_ID_177, whole genome shotgun sequence (18881 bp)
Overview 1 RT 1: 8083-14951 bp Neighborhood of RT #1 [8083, 14953] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 8083-8811 bp Feature: domain Description: FimC Location: 8116-8794 bp Feature: domain Description: FimC Location: 8116-8794 bp Feature: gene Location: 8843-11452 bp Feature: domain Description: FimD Location: 8900-11441 bp Feature: domain Description: FimD Location: 8900-11441 bp Feature: gene Location: 11452-13530 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 11860-12304 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 11860-123 04 bp Feature: gene Location: 13587-14027 bp Feature: domain Description: Integrase_1 Location: 13593-13809 bp Feature: domain Description: Integrase_1 Location: 13 593 -13 809 bp Feature: gene Location: 14288-14953 bp Feature: domain Description: INT_P4_C Location: 14393-14951 bp Feature: domain Description: INT_P4_C Location: 143 93 -14951 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)