myRT

myRT report for GCA_002510925.1_ASM251092v1

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Seq: NLYM01000029.1 Escherichia coli strain MOD1-EC6396 MOD1-EC6396_29_length_79312_cov_43.8554, whole genome shotgun sequence (79312 bp)
Overview 1 RT 1: 60029-63830 bp Neighborhood of RT #1 [60029, 63830] RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C Feature: gene Location: 60029-60175 bp Feature: gene Location: 60656-60796 bp Feature: gene Location: 60818-62542 bp Feature: domain Description: RVT_N Location: 60875-61112 bp Feature: domain Description: RVT_N Location: 60875-61 1 1 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61163-61811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 1 63-61 81 1 bp Feature: domain Description: YkfC Location: 61943-62099 bp Feature: domain Description: YkfC Location: 61 943-62099 bp Feature: domain Description: HNHc Note: nucleases Location: 62327-62486 bp Feature: domain Description: HNHc Note: nucleases Location: 62327-62486 bp Feature: gene Location: 62619-63521 bp Feature: domain Description: DUF1281 Location: 62688-63216 bp Feature: domain Description: DUF1 281 Location: 62688-6321 6 bp Feature: domain Description: DUF1281_C Location: 63222-63450 bp Feature: domain Description: DUF1 281 _C Location: 63222-63450 bp Feature: gene Location: 63525-63830 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)

Seq: NLYM01000040.1 Escherichia coli strain MOD1-EC6396 MOD1-EC6396_40_length_40072_cov_36.6269, whole genome shotgun sequence (40072 bp)
Overview 1 RT 1: 7097-11801 bp Neighborhood of RT #1 [7097, 11884] CdiI_3 RVT-GII RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 Feature: gene Location: 7097-7483 bp Feature: domain Description: CdiI_3 Location: 7121-7397 bp Feature: domain Description: CdiI_3 Location: 712 1-7397 bp Feature: gene Location: 7682-7822 bp Feature: gene Location: 7930-8412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8251-8338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 51-8338 bp Feature: gene Location: 8451-9221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8454-8868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8454-8868 bp Feature: domain Description: GIIM Note: maturase Location: 8919-9084 bp Feature: domain Description: GIIM Note: maturase Location: 8919-9084 bp Feature: gene Location: 9884-11371 bp Feature: domain Description: LZ_Tnp_IS66 Location: 9947-10169 bp Feature: domain Description: LZ_Tnp_IS66 Location: 9947-10169 bp Feature: domain Description: zf-IS66 Location: 10193-10319 bp Feature: domain Description: zf-IS66 Location: 10193-10319 bp Feature: domain Description: DDE_Tnp_IS66 Location: 10367-11216 bp Feature: domain Description: DDE_Tnp_IS66 Location: 10367-112 16 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 11237-11345 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 112 37-11345 bp Feature: gene Location: 11492-11884 bp Feature: domain Description: TnpB_IS66 Location: 11510-11801 bp Feature: domain Description: TnpB_IS66 Location: 11510-11801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CdiI_3 (pfam18616), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717)

Seq: NLYM01000084.1 Escherichia coli strain MOD1-EC6396 MOD1-EC6396_84_length_3489_cov_22.928, whole genome shotgun sequence (3489 bp)
Overview 1 RT 1: 1112-3393 bp Neighborhood of RT #1 [1112, 3488] Q RVT-AbiP2 Feature: gene Location: 1112-2146 bp Feature: domain Description: Q Location: 1115-2138 bp Feature: domain Description: Q Location: 1115-213 8 bp Feature: gene Location: 2193-2345 bp Feature: gene Location: 2358-3488 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2940-3393 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2940-3 3 93 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), RVT-AbiP2