myRT

myRT report for GCA_002511585.1_ASM251158v1

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Seq: NMJL01000011.1 Escherichia coli strain MOD1-EC6297 MOD1-EC6297_11_length_255880_cov_120, whole genome shotgun sequence (255880 bp)
Overview 1 RT 1: 40691-45270 bp Neighborhood of RT #1 [40691, 45275] RVT-Retrons Q P Feature: gene Location: 40691-41026 bp Feature: gene Location: 41289-41450 bp Feature: gene Location: 41483-43423 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41807-42431 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 807-42431 bp Feature: gene Location: 43465-44490 bp Feature: domain Description: Q Location: 43468-44485 bp Feature: domain Description: Q Location: 43468-44485 bp Feature: gene Location: 44490-45275 bp Feature: domain Description: P Location: 44586-45270 bp Feature: domain Description: P Location: 44586-45270 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Q (PHA02536), P (PHA02535)

Seq: NMJL01000014.1 Escherichia coli strain MOD1-EC6297 MOD1-EC6297_14_length_36624_cov_106, whole genome shotgun sequence (36624 bp)
Overview 1 RT 1: 24142-28215 bp Neighborhood of RT #1 [24142, 28215] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 24142-24468 bp Feature: domain Description: InsE Location: 24145-24466 bp Feature: domain Description: InsE Location: 2 4145-2 4466 bp Feature: gene Location: 24468-24947 bp Feature: domain Description: PHA02517 Location: 24528-24882 bp Feature: domain Description: PHA02 517 Location: 2 452 8-2 4882 bp Feature: gene Location: 25539-27062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25812-26544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5812 -2 6544 bp Feature: domain Description: GIIM Note: maturase Location: 26619-26817 bp Feature: domain Description: GIIM Note: maturase Location: 2 6619-2 6817 bp Feature: gene Location: 27239-27625 bp Feature: domain Description: PHA02517 Location: 27242-27623 bp Feature: domain Description: PHA02 517 Location: 2 72 42 -2 762 3 bp Feature: gene Location: 27955-28215 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NMJL01000028.1 Escherichia coli strain MOD1-EC6297 MOD1-EC6297_29_length_35876_cov_114, whole genome shotgun sequence (35876 bp)
Overview 1 RT 1: 23364-29372 bp Neighborhood of RT #1 [23364, 29389] proA PRK09692 RVT-UG7 Psu Feature: gene Location: 23364-24617 bp Feature: domain Description: proA Location: 23391-24582 bp Feature: domain Description: proA Location: 23 3 91-24582 bp Feature: gene Location: 24972-26156 bp Feature: domain Description: PRK09692 Location: 24978-26133 bp Feature: domain Description: PRK09692 Location: 24978-2613 3 bp Feature: gene Location: 26149-27777 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 26557-26986 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 26557-26986 bp Feature: gene Location: 27774-28514 bp Feature: gene Location: 28817-29389 bp Feature: domain Description: Psu Location: 28835-29372 bp Feature: domain Description: Psu Location: 2883 5-293 72 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)