myRT

myRT report for GCA_002512125.1_ASM251212v1

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Seq: NLXG01000036.1 Escherichia coli strain MOD1-EC6452 MOD1-EC6452_36_length_37910_cov_29.4547, whole genome shotgun sequence (37910 bp)
Overview 1 RT 1: 23998-27306 bp Neighborhood of RT #1 [23998, 27320] rph pyrE RVT-Retrons RT_Bac_retron_II slmA Feature: gene Location: 23998-24714 bp Feature: domain Description: rph Location: 24001-24709 bp Feature: domain Description: rph Location: 24001 -24709 bp Feature: gene Location: 24765-25421 bp Feature: domain Description: pyrE Location: 24783-25416 bp Feature: domain Description: pyrE Location: 24783-2541 6 bp Feature: gene Location: 25719-26312 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 25854-26298 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 25854-26298 bp Feature: gene Location: 26334-26678 bp Feature: domain Description: RT_Bac_retron_II Location: 26343-26475 bp Feature: domain Description: RT_Bac_retron_II Location: 26343-26475 bp Feature: gene Location: 26724-27320 bp Feature: domain Description: slmA Location: 26730-27306 bp Feature: domain Description: slmA Location: 26730-27306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, RT_Bac_retron_II (cd03487), slmA (PRK09480)

Seq: NLXG01000047.1 Escherichia coli strain MOD1-EC6452 MOD1-EC6452_47_length_24308_cov_31.8038, whole genome shotgun sequence (24308 bp)
Overview 1 RT 1: 18351-22187 bp Neighborhood of RT #1 [18351, 22187] PHA02517 COG3547 RVT-GII PHA02517 Feature: gene Location: 18351-18536 bp Feature: domain Description: PHA02517 Location: 18354-18531 bp Feature: domain Description: PHA02 517 Location: 18354-18531 bp Feature: gene Location: 18655-19701 bp Feature: domain Description: COG3547 Location: 18664-19585 bp Feature: domain Description: COG3547 Location: 18664-19585 bp Feature: gene Location: 19950-21284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20223-20955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 02 2 3-2 0955 bp Feature: domain Description: PHA02517 Location: 21105-21246 bp Feature: domain Description: PHA02 517 Location: 2 1105-2 12 46 bp Feature: gene Location: 21578-22009 bp Feature: gene Location: 22020-22187 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), COG3547 (Transposase ), RVT-GII

Seq: NLXG01000056.1 Escherichia coli strain MOD1-EC6452 MOD1-EC6452_56_length_15216_cov_25.8838, whole genome shotgun sequence (15216 bp)
Overview 1 RT 1: 7857-13590 bp Neighborhood of RT #1 [7857, 13595] Phage_GPA RVT-AbiP2 Q Feature: gene Location: 7857-10133 bp Feature: domain Description: Phage_GPA Location: 8256-9243 bp Feature: domain Description: Phage_GPA Location: 8256-9243 bp Feature: gene Location: 10195-10455 bp Feature: gene Location: 10621-12165 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 11038-11491 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1103 8-11491 bp Feature: gene Location: 12360-12512 bp Feature: gene Location: 12561-13595 bp Feature: domain Description: Q Location: 12564-13590 bp Feature: domain Description: Q Location: 12564-13 590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-AbiP2, Q (PHA02536)