myRT

myRT report for GCA_002512455.1_ASM251245v1

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Seq: NMII01000116.1 Escherichia coli strain MOD1-EC6376 MOD1-EC6376_116_length_8333_cov_15.266, whole genome shotgun sequence (8333 bp)
Overview 1 RT 1: 247-2545 bp Neighborhood of RT #1 [247, 2586] RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 247-414 bp Feature: gene Location: 440-1672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 641-1295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 641 -1 295 bp Feature: domain Description: GIIM Note: maturase Location: 1373-1595 bp Feature: domain Description: GIIM Note: maturase Location: 1 373-1 595 bp Feature: gene Location: 1667-2086 bp Feature: gene Location: 2134-2586 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2164-2545 bp Feature: domain Description: DDE_Tnp_IS66 Location: 21 64-2545 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388)

Seq: NMII01000150.1 Escherichia coli strain MOD1-EC6376 MOD1-EC6376_150_length_3101_cov_53.0708, whole genome shotgun sequence (3101 bp)
Overview 1 RT 1: 1-2697 bp Neighborhood of RT #1 [1, 2942] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 1-348 bp Feature: domain Description: InsE Location: 25-346 bp Feature: domain Description: InsE Location: 2 5-346 bp Feature: gene Location: 348-827 bp Feature: domain Description: PHA02517 Location: 408-762 bp Feature: domain Description: PHA02 517 Location: 408-762 bp Feature: gene Location: 1419-2942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1692-2424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1692 -2 42 4 bp Feature: domain Description: GIIM Note: maturase Location: 2499-2697 bp Feature: domain Description: GIIM Note: maturase Location: 2 499-2 697 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: NMII01000086.1 Escherichia coli strain MOD1-EC6376 MOD1-EC6376_86_length_15927_cov_25.3117, whole genome shotgun sequence (15927 bp)
Overview 1 RT 1: 3188-6899 bp Neighborhood of RT #1 [3188, 6899] LacI PBP1_GntR RVT-GII GIIM RVT-GII Feature: gene Location: 3188-4219 bp Feature: domain Description: LacI Location: 3230-3365 bp Feature: domain Description: LacI Location: 3 23 0-3 3 65 bp Feature: domain Description: PBP1_GntR Location: 3404-4214 bp Feature: domain Description: PBP1_GntR Location: 3 404-4214 bp Feature: gene Location: 4350-4568 bp Feature: gene Location: 4746-5597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4749-5157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4749-5157 bp Feature: domain Description: GIIM Note: maturase Location: 5205-5427 bp Feature: domain Description: GIIM Note: maturase Location: 5205-5427 bp Feature: gene Location: 5570-6004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5762-5978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5762-5978 bp Feature: gene Location: 6173-6370 bp Feature: gene Location: 6729-6899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LacI (pfam00356), PBP1_GntR (cd01575), RVT-GII, GIIM (pfam08388)