myRT

myRT report for GCA_002512815.1_ASM251281v1

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Seq: NMAI01000110.1 Escherichia coli strain MOD1-EC6267 MOD1-EC6267_110_length_41677_cov_38, whole genome shotgun sequence (41677 bp)
Overview 1 RT 1: 37049-41382 bp Neighborhood of RT #1 [37049, 41450] gnd YhhI YhhI YhhI RVT-GII GIIM RVT-GII Feature: gene Location: 37049-38455 bp Feature: domain Description: gnd Location: 37064-38453 bp Feature: domain Description: gnd Location: 37064-38453 bp Feature: gene Location: 38609-39745 bp Feature: domain Description: YhhI Location: 38612-38975 bp Feature: domain Description: YhhI Location: 3861 2-38975 bp Feature: domain Description: YhhI Location: 39032-39386 bp Feature: domain Description: YhhI Location: 39032-39386 bp Feature: domain Description: YhhI Location: 39422-39665 bp Feature: domain Description: YhhI Location: 39422-39665 bp Feature: gene Location: 39952-40581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39958-40192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39958-401 92 bp Feature: domain Description: GIIM Note: maturase Location: 40282-40489 bp Feature: domain Description: GIIM Note: maturase Location: 40282-40489 bp Feature: gene Location: 40563-41450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41016-41382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 01 6-41 382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gnd (TIGR00873), YhhI (COG5433), RVT-GII, GIIM (pfam08388)

Seq: NMAI01000045.1 Escherichia coli strain MOD1-EC6267 MOD1-EC6267_45_length_45473_cov_42, whole genome shotgun sequence (45473 bp)
Overview 1 RT 1: 40918-44800 bp Neighborhood of RT #1 [40918, 44805] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 40918-41634 bp Feature: domain Description: rph Location: 40921-41629 bp Feature: domain Description: rph Location: 4092 1-4162 9 bp Feature: gene Location: 41685-42341 bp Feature: domain Description: pyrE Location: 41703-42336 bp Feature: domain Description: pyrE Location: 41703-42 336 bp Feature: gene Location: 42639-43598 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42774-43323 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42 774-4332 3 bp Feature: gene Location: 43644-44240 bp Feature: domain Description: slmA Location: 43650-44226 bp Feature: domain Description: slmA Location: 43650-442 2 6 bp Feature: gene Location: 44347-44805 bp Feature: domain Description: dut Location: 44353-44800 bp Feature: domain Description: dut Location: 44353-44800 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: NMAI01000080.1 Escherichia coli strain MOD1-EC6267 MOD1-EC6267_80_length_34058_cov_39, whole genome shotgun sequence (34058 bp)
Overview 1 RT 1: 23545-27288 bp Neighborhood of RT #1 [23545, 27299] SmpB RVT-UG11 PRK09678 D Feature: gene Location: 23545-24027 bp Feature: domain Description: SmpB Location: 23575-24022 bp Feature: domain Description: SmpB Location: 23 575-24022 bp Feature: gene Location: 24161-24328 bp Feature: gene Location: 24713-25486 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 24848-25301 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 24848-253 01 bp Feature: gene Location: 25890-26108 bp Feature: domain Description: PRK09678 Location: 25893-26091 bp Feature: domain Description: PRK09678 Location: 25893 -26091 bp Feature: gene Location: 26199-27299 bp Feature: domain Description: D Location: 26205-27288 bp Feature: domain Description: D Location: 26205-27288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmpB (pfam01668), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional), D (PHA02561)