myRT

myRT report for GCA_002513115.1_ASM251311v1

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Seq: NLVQ01000036.1 Escherichia coli strain MOD1-EC6527 MOD1-EC6527_36_length_49562_cov_45.9432, whole genome shotgun sequence (49560 bp)
Overview 1 RT 1: 5-4826 bp Neighborhood of RT #1 [5, 4828] Caudo_TAP RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 5-355 bp Feature: domain Description: Caudo_TAP Location: 29-344 bp Feature: domain Description: Caudo_TAP Location: 29-344 bp Feature: gene Location: 800-2404 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1091-1682 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 091 -1 682 bp Feature: domain Description: TIR_2 Location: 2009-2342 bp Feature: domain Description: TIR_2 Location: 2009-2342 bp Feature: gene Location: 2762-3022 bp Feature: domain Description: PRK10597 Location: 2765-3005 bp Feature: domain Description: PRK1 0597 Location: 2765-3005 bp Feature: gene Location: 3242-4828 bp Feature: domain Description: prfC Location: 3260-4826 bp Feature: domain Description: prfC Location: 3260-4826 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503), Caudo_TAP (pfam02413), RVT-Retrons, TIR_2 (pfam13676)

Seq: NLVQ01000078.1 Escherichia coli strain MOD1-EC6527 MOD1-EC6527_78_length_6736_cov_35.3188, whole genome shotgun sequence (6736 bp)
Overview 1 RT 1: 2295-6295 bp Neighborhood of RT #1 [2295, 6303] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 2295-3656 bp Feature: domain Description: DcuC Location: 2298-3630 bp Feature: domain Description: DcuC Location: 2 2 98-3630 bp Feature: gene Location: 3709-4080 bp Feature: gene Location: 4302-4748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4608-4710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4608-4710 bp Feature: gene Location: 4796-4945 bp Feature: gene Location: 5272-6303 bp Feature: domain Description: Asparaginase_2 Location: 5362-6295 bp Feature: domain Description: Asparaginase_2 Location: 5362 -62 95 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)

Seq: NLVQ01000096.1 Escherichia coli strain MOD1-EC6527 MOD1-EC6527_96_length_2593_cov_59.6645, whole genome shotgun sequence (2593 bp)
Overview 1 RT 1: 1-2437 bp Neighborhood of RT #1 [1, 2472] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1-231 bp Feature: gene Location: 343-525 bp Feature: gene Location: 805-2472 bp Feature: RT Description: RVT_N Location: 853-1090 bp Feature: RT Description: RVT_N Location: 853 -1090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1141-1783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1141-1783 bp Feature: domain Description: GIIM Note: maturase Location: 1834-2068 bp Feature: domain Description: GIIM Note: maturase Location: 183 4-2068 bp Feature: domain Description: HNHc Note: nucleases Location: 2278-2437 bp Feature: domain Description: HNHc Note: nucleases Location: 2278-243 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)