myRT

myRT report for GCA_002513315.1_ASM251331v1

Download annotations/find similar RTs

Seq: NLWS01000002.1 Escherichia coli strain MOD1-EC6495 MOD1-EC6495_2_length_68958_cov_47.8, whole genome shotgun sequence (68958 bp)
Overview 1 RT 1: 64303-68185 bp Neighborhood of RT #1 [64303, 68190] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 64303-65019 bp Feature: domain Description: rph Location: 64306-65014 bp Feature: domain Description: rph Location: 64306-6501 4 bp Feature: gene Location: 65070-65726 bp Feature: domain Description: pyrE Location: 65088-65721 bp Feature: domain Description: pyrE Location: 65088-65721 bp Feature: gene Location: 66024-66983 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66159-66708 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 661 59-66708 bp Feature: gene Location: 67029-67625 bp Feature: domain Description: slmA Location: 67035-67611 bp Feature: domain Description: slmA Location: 67035-6761 1 bp Feature: gene Location: 67732-68190 bp Feature: domain Description: dut Location: 67738-68185 bp Feature: domain Description: dut Location: 67738-681 85 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: NLWS01000095.1 Escherichia coli strain MOD1-EC6495 MOD1-EC6495_95_length_33364_cov_49.7, whole genome shotgun sequence (33364 bp)
Overview 1 RT 1: 23362-27105 bp Neighborhood of RT #1 [23362, 27116] SmpB RVT-UG11 PRK09678 D Feature: gene Location: 23362-23844 bp Feature: domain Description: SmpB Location: 23392-23839 bp Feature: domain Description: SmpB Location: 2 3392 -2 3839 bp Feature: gene Location: 23978-24145 bp Feature: gene Location: 24530-25303 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 24665-25118 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2 4665-2 5118 bp Feature: gene Location: 25707-25925 bp Feature: domain Description: PRK09678 Location: 25710-25908 bp Feature: domain Description: PRK09678 Location: 2 5710-2 5908 bp Feature: gene Location: 26016-27116 bp Feature: domain Description: D Location: 26022-27105 bp Feature: domain Description: D Location: 2 602 2 -2 7105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmpB (pfam01668), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional), D (PHA02561)