myRT

myRT report for GCA_002513485.1_ASM251348v1

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Seq: NLXL01000012.1 Escherichia coli strain MOD1-EC6444 MOD1-EC6444_12_length_125910_cov_23.5835, whole genome shotgun sequence (125910 bp)
Overview 1 RT 1: 91291-95173 bp Neighborhood of RT #1 [91291, 95178] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 91291-91749 bp Feature: domain Description: dut Location: 91297-91744 bp Feature: domain Description: dut Location: 91 297-91 744 bp Feature: gene Location: 91856-92452 bp Feature: domain Description: slmA Location: 91862-92438 bp Feature: domain Description: slmA Location: 91 862-92438 bp Feature: gene Location: 92498-93457 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 92633-93182 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 92633-931 82 bp Feature: gene Location: 93755-94411 bp Feature: domain Description: pyrE Location: 93773-94406 bp Feature: domain Description: pyrE Location: 93773-94406 bp Feature: gene Location: 94462-95178 bp Feature: domain Description: rph Location: 94465-95173 bp Feature: domain Description: rph Location: 94465-951 73 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NLXL01000052.1 Escherichia coli strain MOD1-EC6444 MOD1-EC6444_52_length_22224_cov_27.152, whole genome shotgun sequence (22224 bp)
Overview 1 RT 1: 3613-7954 bp Neighborhood of RT #1 [3613, 7965] InsE PHA02517 RVT-GII GIIM PHA02517 TetR_N TetR_C_28 Feature: gene Location: 3613-3939 bp Feature: domain Description: InsE Location: 3616-3937 bp Feature: domain Description: InsE Location: 3616-3937 bp Feature: gene Location: 3939-4418 bp Feature: domain Description: PHA02517 Location: 3999-4353 bp Feature: domain Description: PHA02 517 Location: 3999-4353 bp Feature: gene Location: 5010-6533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5283-6015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 83-6015 bp Feature: domain Description: GIIM Note: maturase Location: 6090-6288 bp Feature: domain Description: GIIM Note: maturase Location: 6090-62 88 bp Feature: gene Location: 6710-7096 bp Feature: domain Description: PHA02517 Location: 6713-7094 bp Feature: domain Description: PHA02 517 Location: 6713-7094 bp Feature: gene Location: 7387-7965 bp Feature: domain Description: TetR_N Location: 7456-7591 bp Feature: domain Description: TetR_N Location: 7456-7591 bp Feature: domain Description: TetR_C_28 Location: 7666-7954 bp Feature: domain Description: TetR_C_2 8 Location: 7666-7954 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), TetR_N (pfam00440), TetR_C_28 (pfam17937)