myRT

myRT report for GCA_002514175.1_ASM251417v1

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Seq: NLZT01000069.1 Escherichia coli strain MOD1-EC6325 MOD1-EC6325_69_length_7473_cov_30.2116, whole genome shotgun sequence (7473 bp)
Overview 1 RT 1: 244-7170 bp Neighborhood of RT #1 [244, 7265] RhsA RHS_repeat RHS_repeat RHS_repeat RHS_repeat RhsA RVT-GII GIIM Feature: gene Location: 244-4029 bp Feature: domain Description: RhsA Location: 394-823 bp Feature: domain Description: RhsA Location: 394-823 bp Feature: domain Description: RHS_repeat Location: 904-994 bp Feature: domain Description: RHS_repeat Location: 904-994 bp Feature: domain Description: RHS_repeat Location: 1048-1141 bp Feature: domain Description: RHS_repeat Location: 1 048-1 1 41 bp Feature: domain Description: RHS_repeat Location: 1174-1267 bp Feature: domain Description: RHS_repeat Location: 1 1 74-1 267 bp Feature: domain Description: RHS_repeat Location: 1288-1405 bp Feature: domain Description: RHS_repeat Location: 1 288-1 405 bp Feature: domain Description: RhsA Location: 1426-3595 bp Feature: domain Description: RhsA Location: 1 426-3595 bp Feature: gene Location: 5043-5417 bp Feature: gene Location: 5766-7265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6219-6876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 621 9-6876 bp Feature: domain Description: GIIM Note: maturase Location: 6960-7170 bp Feature: domain Description: GIIM Note: maturase Location: 6960-71 70 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RhsA (COG3209), RHS_repeat (pfam05593), RVT-GII, GIIM (pfam08388)

Seq: NLZT01000089.1 Escherichia coli strain MOD1-EC6325 MOD1-EC6325_90_length_3066_cov_16.2308, whole genome shotgun sequence (3066 bp)
Overview 1 RT 1: 1023-3063 bp Neighborhood of RT #1 [1023, 3065] DUF932 RVT-Retrons Feature: gene Location: 1023-1184 bp Feature: gene Location: 1268-2089 bp Feature: domain Description: DUF932 Location: 1379-2054 bp Feature: domain Description: DUF932 Location: 1379-2 054 bp Feature: gene Location: 2340-3065 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2478-3063 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 478-3063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-Retrons