myRT

myRT report for GCA_002514245.1_ASM251424v1

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Seq: NMAE01000035.1 Escherichia coli strain MOD1-EC6291 MOD1-EC6291_35_length_59187_cov_98, whole genome shotgun sequence (59187 bp)
Overview 1 RT 1: 51220-56949 bp Neighborhood of RT #1 [51220, 56957] Phage_GPA RVT-AbiP2 Q Feature: gene Location: 51220-53496 bp Feature: domain Description: Phage_GPA Location: 51619-52606 bp Feature: domain Description: Phage_GPA Location: 51 61 9-52606 bp Feature: gene Location: 53558-53818 bp Feature: gene Location: 53984-55528 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 54401-54854 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 54401 -54854 bp Feature: gene Location: 55723-55884 bp Feature: gene Location: 55923-56957 bp Feature: domain Description: Q Location: 55926-56949 bp Feature: domain Description: Q Location: 55926-56949 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-AbiP2, Q (PHA02536)

Seq: NMAE01000004.1 Escherichia coli strain MOD1-EC6291 MOD1-EC6291_4_length_16482_cov_86, whole genome shotgun sequence (16482 bp)
Overview 1 RT 1: 7900-15620 bp Neighborhood of RT #1 [7900, 15652] RMtype1_S_SonII-TRD2-CR2_like RMtype1_S_SonII-TRD2-CR2_like PRK04247 RVT-UG5 IncA Peptidase_M78 Feature: gene Location: 7900-9675 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 8491-8779 bp Feature: domain Description: RMtype1_S_SonII-TRD2 -CR2 _like Location: 8491-8779 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 9082-9655 bp Feature: domain Description: RMtype1_S_SonII-TRD2 -CR2 _like Location: 9082 -9655 bp Feature: gene Location: 9686-10786 bp Feature: domain Description: PRK04247 Location: 9749-9980 bp Feature: domain Description: PRK042 47 Location: 9749-9980 bp Feature: gene Location: 10964-13981 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 11462-11951 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 11462 -11951 bp Feature: gene Location: 14385-15104 bp Feature: domain Description: IncA Location: 14721-15063 bp Feature: domain Description: IncA Location: 1472 1-15063 bp Feature: gene Location: 15104-15652 bp Feature: domain Description: Peptidase_M78 Location: 15257-15620 bp Feature: domain Description: Peptidase_M78 Location: 152 57-1562 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_SonII-TRD2-CR2_like (cd17246), PRK04247 (endonuclease NucS), RVT-UG5, IncA, Peptidase_M78 (pfam06114)

Seq: NMAE01000053.1 Escherichia coli strain MOD1-EC6291 MOD1-EC6291_53_length_14199_cov_134, whole genome shotgun sequence (14199 bp)
Overview 1 RT 1: 7198-10249 bp Neighborhood of RT #1 [7198, 10374] PHA02517 RVT-GII YkfC HlyC Feature: gene Location: 7198-7617 bp Feature: domain Description: PHA02517 Location: 7201-7606 bp Feature: domain Description: PHA02517 Location: 7201-7606 bp Feature: gene Location: 7740-7925 bp Feature: gene Location: 8098-8910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8191-8770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8191-8770 bp Feature: gene Location: 8771-9787 bp Feature: domain Description: YkfC Location: 9467-9737 bp Feature: domain Description: YkfC Location: 9467-973 7 bp Feature: gene Location: 9868-10374 bp Feature: domain Description: HlyC Location: 9889-10249 bp Feature: domain Description: HlyC Location: 9889-10249 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, YkfC (COG3344), HlyC (pfam02794)

Seq: NMAE01000058.1 Escherichia coli strain MOD1-EC6291 MOD1-EC6291_58_length_8799_cov_185, whole genome shotgun sequence (8799 bp)
Overview 1 RT 1: 6-1836 bp Neighborhood of RT #1 [6, 1836] RVT_N RVT-GII GIIM Feature: gene Location: 6-1277 bp Feature: domain Description: RVT_N Location: 63-300 bp Feature: domain Description: RVT_N Location: 63-300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351-999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351-999 bp Feature: domain Description: GIIM Note: maturase Location: 1053-1239 bp Feature: domain Description: GIIM Note: maturase Location: 1053-1239 bp Feature: gene Location: 1318-1458 bp Feature: gene Location: 1540-1836 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)