myRT

myRT report for GCA_002514455.1_ASM251445v1

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Seq: NMKF01000039.1 Escherichia coli strain MOD1-EC6033 MOD1-EC6033_39_length_26747_cov_12.9251, whole genome shotgun sequence (26747 bp)
Overview 1 RT 1: 1-2915 bp Neighborhood of RT #1 [1, 2920] COG4584 RVT-GII GIIM PapG_CBD PapG_C Feature: gene Location: 1-222 bp Feature: domain Description: COG4584 Location: 4-196 bp Feature: domain Description: COG4584 Location: 4-1 96 bp Feature: gene Location: 219-1514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 549-1167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 549-1 1 67 bp Feature: domain Description: GIIM Note: maturase Location: 1215-1446 bp Feature: domain Description: GIIM Note: maturase Location: 1 21 5-1 446 bp Feature: gene Location: 1557-1862 bp Feature: gene Location: 2009-2920 bp Feature: domain Description: PapG_CBD Location: 2072-2561 bp Feature: domain Description: PapG_CBD Location: 2072-2561 bp Feature: domain Description: PapG_C Location: 2597-2915 bp Feature: domain Description: PapG_C Location: 2597-291 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), PapG_CBD (cl28665), PapG_C (pfam03628), RVT-GII, GIIM (pfam08388)

Seq: NMKF01000003.1 Escherichia coli strain MOD1-EC6033 MOD1-EC6033_3_length_350546_cov_28.5942, whole genome shotgun sequence (350546 bp)
Overview 1 RT 1: 272273-276884 bp Neighborhood of RT #1 [272273, 276884] HTH_1 PBP2_CrgA_like_5 PBP2_CrgA_like_5 RVT-Retrons Feature: gene Location: 272273-273157 bp Feature: domain Description: HTH_1 Location: 272297-272471 bp Feature: domain Description: HTH_1 Location: 2 72 2 97-2 72 471 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 272552-273149 bp Feature: domain Description: PBP2 _CrgA_like_5 Location: 2 72 552 -2 73149 bp Feature: gene Location: 273741-273956 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 273744-273930 bp Feature: domain Description: PBP2 _CrgA_like_5 Location: 2 73744-2 73930 bp Feature: gene Location: 274821-275753 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 274923-275514 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 7492 3-2 75514 bp Feature: gene Location: 275740-276708 bp Feature: gene Location: 276741-276884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_1 (pfam00126), PBP2_CrgA_like_5 (cd08474), RVT-Retrons

Seq: NMKF01000046.1 Escherichia coli strain MOD1-EC6033 MOD1-EC6033_46_length_14278_cov_15.3029, whole genome shotgun sequence (14278 bp)
Overview 1 RT 1: 11121-14278 bp Neighborhood of RT #1 [11121, 14277] RVT_N RVT-GII GIIM HNHc PRK13699 Feature: gene Location: 11121-11276 bp Feature: gene Location: 11307-11492 bp Feature: gene Location: 11881-13581 bp Feature: RT Description: RVT_N Location: 11935-12178 bp Feature: RT Description: RVT_N Location: 1193 5-12178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12223-12859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12223 -12859 bp Feature: domain Description: GIIM Note: maturase Location: 12910-13144 bp Feature: domain Description: GIIM Note: maturase Location: 12910-13 144 bp Feature: domain Description: HNHc Note: nucleases Location: 13375-13525 bp Feature: domain Description: HNHc Note: nucleases Location: 13 3 75-13 525 bp Feature: gene Location: 14068-14277 bp Feature: domain Description: PRK13699 Location: 14203-14278 bp Feature: domain Description: PRK13 699 Location: 14203 -14278 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13699 (putative methylase; Provisional)

Seq: NMKF01000004.1 Escherichia coli strain MOD1-EC6033 MOD1-EC6033_4_length_275085_cov_28.4912, whole genome shotgun sequence (275085 bp)
Overview 1 RT 1: 186630-193193 bp Neighborhood of RT #1 [186630, 193201] DUF5405 Phage_GPA RVT-Retrons ABC_ATPase Q Feature: gene Location: 186630-186905 bp Feature: domain Description: DUF5405 Location: 186648-186888 bp Feature: domain Description: DUF54 05 Location: 18664 8-186888 bp Feature: gene Location: 186895-189165 bp Feature: domain Description: Phage_GPA Location: 187294-188281 bp Feature: domain Description: Phage_GPA Location: 187294 -188281 bp Feature: gene Location: 189493-190482 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 189610-190171 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 189610-190171 bp Feature: gene Location: 190484-191836 bp Feature: domain Description: ABC_ATPase Location: 190544-191267 bp Feature: domain Description: ABC_ATPase Location: 19054 4 -191267 bp Feature: gene Location: 192167-193201 bp Feature: domain Description: Q Location: 192170-193193 bp Feature: domain Description: Q Location: 192170-193193 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5405 (pfam17399), Phage_GPA (pfam05840), RVT-Retrons, ABC_ATPase (pfam09818), Q (PHA02536)