myRT

myRT report for GCA_002516285.1_ASM251628v1

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Seq: NJSK01000030.1 Escherichia coli strain MOD1-EC2703 MOD1-EC2703_30_length_154226_cov_136.6, whole genome shotgun sequence (154226 bp)
Overview 1 RT 1: 46737-53115 bp Neighborhood of RT #1 [46737, 53115] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Feature: gene Location: 46737-47657 bp Feature: domain Description: AbiEii Location: 46779-47520 bp Feature: domain Description: AbiEii Location: 46779-47520 bp Feature: gene Location: 47644-48447 bp Feature: domain Description: AbiEi_3_N Location: 47677-47938 bp Feature: domain Description: AbiEi_3_N Location: 47677-47938 bp Feature: domain Description: AbiEi_3 Location: 47950-48406 bp Feature: domain Description: AbiEi_3 Location: 47950-48406 bp Feature: gene Location: 48743-51952 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 49271-49763 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 49271 -49763 bp Feature: domain Description: nitrilase Location: 51266-51863 bp Feature: domain Description: nitrilase Location: 51 266-51 863 bp Feature: gene Location: 52296-52766 bp Feature: gene Location: 52849-53115 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424)

Seq: NJSK01000007.1 Escherichia coli strain MOD1-EC2703 MOD1-EC2703_7_length_96211_cov_147.6, whole genome shotgun sequence (96211 bp)
Overview 1 RT 1: 81026-84627 bp Neighborhood of RT #1 [81026, 84668] COG3561 RVT-GII GIIM Peptidase_C58 Feature: gene Location: 81026-81166 bp Feature: gene Location: 81190-81819 bp Feature: domain Description: COG3561 Location: 81217-81547 bp Feature: domain Description: COG3561 Location: 812 17-81547 bp Feature: gene Location: 82267-83484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82588-83206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 588-832 06 bp Feature: domain Description: GIIM Note: maturase Location: 83254-83464 bp Feature: domain Description: GIIM Note: maturase Location: 832 54-83464 bp Feature: gene Location: 83564-83695 bp Feature: gene Location: 84165-84668 bp Feature: domain Description: Peptidase_C58 Location: 84369-84627 bp Feature: domain Description: Peptidase_C58 Location: 84369-8462 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3561 (Phage anti-repressor protein ), RVT-GII, GIIM (pfam08388), Peptidase_C58 (pfam03543)

Seq: NJSK01000094.1 Escherichia coli strain MOD1-EC2703 MOD1-EC2703_94_length_8373_cov_160.9, whole genome shotgun sequence (8373 bp)
Overview 1 RT 1: 3-1852 bp 2 RT 2: 4982-8001 bp Neighborhood of RT #1 [3, 1852] RVT_N RVT-GII GIIM Neighborhood of RT #2 [4982, 8001] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 3-1379 bp Feature: domain Description: RVT_N Location: 57-300 bp Feature: domain Description: RVT_N Location: 57-3 00 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 345-981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 45-981 bp Feature: domain Description: GIIM Note: maturase Location: 1032-1266 bp Feature: domain Description: GIIM Note: maturase Location: 103 2-1266 bp Feature: gene Location: 1416-1544 bp Feature: gene Location: 1652-1852 bp Feature: gene Location: 4982-5173 bp Feature: gene Location: 5037-5342 bp Feature: gene Location: 5485-7152 bp Feature: domain Description: RVT_N Location: 5533-5770 bp Feature: domain Description: RVT_N Location: 553 3 -5770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5821-6463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5821-6463 bp Feature: domain Description: GIIM Note: maturase Location: 6514-6748 bp Feature: domain Description: GIIM Note: maturase Location: 6514-6748 bp Feature: domain Description: HNHc Note: nucleases Location: 6958-7117 bp Feature: domain Description: HNHc Note: nucleases Location: 6958-7117 bp Feature: gene Location: 7432-7614 bp Feature: gene Location: 7726-8001 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)