myRT

myRT report for GCA_002516555.1_ASM251655v1

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Seq: NOGX01000129.1 Escherichia coli strain MOD1-EC5131 MOD1-EC5131_185_length_2404_cov_314.747, whole genome shotgun sequence (2404 bp)
Overview 1 RT 1: 191-2403 bp Neighborhood of RT #1 [191, 2403] RVT-GII GIIM Feature: gene Location: 191-1714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1 1 96 bp Feature: domain Description: GIIM Note: maturase Location: 1271-1469 bp Feature: domain Description: GIIM Note: maturase Location: 1 271 -1 469 bp Feature: gene Location: 2008-2403 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NOGX01000026.1 Escherichia coli strain MOD1-EC5131 MOD1-EC5131_26_length_53515_cov_114.693, whole genome shotgun sequence (53515 bp)
Overview 1 RT 1: 45417-51411 bp Neighborhood of RT #1 [45417, 51533] prfC SLATT_5 RVT-UG17 Caudo_TAP Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Feature: gene Location: 45417-47003 bp Feature: domain Description: prfC Location: 45435-47001 bp Feature: domain Description: prfC Location: 45435-47001 bp Feature: gene Location: 47534-48238 bp Feature: domain Description: SLATT_5 Location: 47696-48206 bp Feature: domain Description: SLATT_5 Location: 47696-482 06 bp Feature: gene Location: 48216-49586 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 48444-49050 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 48444-49050 bp Feature: gene Location: 49699-50283 bp Feature: domain Description: Caudo_TAP Location: 49921-50272 bp Feature: domain Description: Caudo_TAP Location: 4992 1-502 72 bp Feature: gene Location: 50283-51533 bp Feature: domain Description: Collar Location: 50856-50994 bp Feature: domain Description: Collar Location: 50856-50994 bp Feature: domain Description: Phage_fiber Location: 51045-51081 bp Feature: domain Description: Phage_fiber Location: 51045-51081 bp Feature: domain Description: Phage_fiber Location: 51141-51180 bp Feature: domain Description: Phage_fiber Location: 51141-51180 bp Feature: domain Description: Phage_fiber Location: 51336-51375 bp Feature: domain Description: Phage_fiber Location: 51336-51375 bp Feature: domain Description: Phage_fiber Location: 51381-51411 bp Feature: domain Description: Phage_fiber Location: 51381-51411 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), Collar (pfam07484), Phage_fiber (pfam03335)

Seq: NOGX01000083.1 Escherichia coli strain MOD1-EC5131 MOD1-EC5131_84_length_8711_cov_141.197, whole genome shotgun sequence (8711 bp)
Overview 1 RT 1: 1017-8378 bp Neighborhood of RT #1 [1017, 8473] PAAR_2 RhsA RHS_repeat RhsA RhsA RVT-GII GIIM Feature: gene Location: 1017-5237 bp Feature: domain Description: PAAR_2 Location: 1023-1104 bp Feature: domain Description: PAAR_2 Location: 1023 -1104 bp Feature: domain Description: RhsA Location: 1602-2049 bp Feature: domain Description: RhsA Location: 1602-2049 bp Feature: domain Description: RHS_repeat Location: 2112-2202 bp Feature: domain Description: RHS_repeat Location: 2112-2202 bp Feature: domain Description: RhsA Location: 2271-2607 bp Feature: domain Description: RhsA Location: 2271-2607 bp Feature: domain Description: RhsA Location: 2634-4803 bp Feature: domain Description: RhsA Location: 263 4-4803 bp Feature: gene Location: 6251-6625 bp Feature: gene Location: 6974-8473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7427-8084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7427-8084 bp Feature: domain Description: GIIM Note: maturase Location: 8168-8378 bp Feature: domain Description: GIIM Note: maturase Location: 8168-83 78 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAAR_2 (cd14738), RhsA (COG3209), RHS_repeat (pfam05593), RVT-GII, GIIM (pfam08388)