myRT

myRT report for GCA_002516565.1_ASM251656v1

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Seq: NOGY01000081.1 Escherichia coli strain MOD1-EC5130 MOD1-EC5130_81_length_12879_cov_126.2, whole genome shotgun sequence (12879 bp)
Overview 1 RT 1: 61-4884 bp Neighborhood of RT #1 [61, 4904] PHA02517 RVT-GII GIIM PHA02517 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 61-255 bp Feature: gene Location: 350-562 bp Feature: domain Description: PHA02517 Location: 353-497 bp Feature: domain Description: PHA0251 7 Location: 353-497 bp Feature: gene Location: 1154-2677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1427-2159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 427-21 59 bp Feature: domain Description: GIIM Note: maturase Location: 2234-2432 bp Feature: domain Description: GIIM Note: maturase Location: 2234-2432 bp Feature: gene Location: 2854-3234 bp Feature: domain Description: PHA02517 Location: 2857-3226 bp Feature: domain Description: PHA0251 7 Location: 2857-3226 bp Feature: gene Location: 3369-4904 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3486-3699 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3486-3699 bp Feature: domain Description: zf-IS66 Location: 3720-3852 bp Feature: domain Description: zf-IS66 Location: 3720-3852 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3897-4752 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3897-4752 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4773-4884 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4773-4884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)

Seq: NOGY01000091.1 Escherichia coli strain MOD1-EC5130 MOD1-EC5130_91_length_9474_cov_145.054, whole genome shotgun sequence (9474 bp)
Overview 1 RT 1: 3915-9453 bp Neighborhood of RT #1 [3915, 9473] YafY DUF932 RVT_N RVT-GII YkfC YeeP InsE Feature: gene Location: 3915-4598 bp Feature: domain Description: YafY Location: 3933-4506 bp Feature: domain Description: YafY Location: 3933-4506 bp Feature: gene Location: 4825-5403 bp Feature: domain Description: DUF932 Location: 4834-5362 bp Feature: domain Description: DUF932 Location: 4834-5362 bp Feature: gene Location: 6102-7811 bp Feature: RT Description: RVT_N Location: 6156-6399 bp Feature: RT Description: RVT_N Location: 6156-6399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6444-7080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6444-7080 bp Feature: domain Description: YkfC Location: 7200-7416 bp Feature: domain Description: YkfC Location: 72 00-7416 bp Feature: gene Location: 8107-8970 bp Feature: domain Description: YeeP Location: 8110-8968 bp Feature: domain Description: YeeP Location: 8110-8968 bp Feature: gene Location: 9171-9473 bp Feature: domain Description: InsE Location: 9183-9453 bp Feature: domain Description: InsE Location: 9183-9453 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YafY (COG2378), DUF932 (pfam06067), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), YeeP (COG3596), InsE (COG2963)